Results 81 - 100 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23417 | 5' | -65 | NC_005259.1 | + | 16457 | 0.68 | 0.272992 |
Target: 5'- uCGGCaucGGuaCCCCGCCgCAgaUCGCCGucaaggGCGCa -3' miRNA: 3'- cGCCG---CC--GGGGCGG-GU--AGCGGC------UGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 15377 | 0.66 | 0.349927 |
Target: 5'- -gGGCGaGCUgCCGCaaCCGUgGCCG-CGCa -3' miRNA: 3'- cgCCGC-CGG-GGCG--GGUAgCGGCuGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 14707 | 0.67 | 0.306162 |
Target: 5'- cGCcGCGacgaacagcacGCCgCGCUCGUCGCCGAgauguaCGCg -3' miRNA: 3'- -CGcCGC-----------CGGgGCGGGUAGCGGCU------GCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 14315 | 0.68 | 0.260554 |
Target: 5'- aUGGCcGCCCucgacgccgcCGCCCGcgugcgggcCGCCGACGCc -3' miRNA: 3'- cGCCGcCGGG----------GCGGGUa--------GCGGCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 12562 | 0.66 | 0.319552 |
Target: 5'- cGgGGUGGCCcgccagauccaugCCGCCCcacgCGUCGACccauGCg -3' miRNA: 3'- -CgCCGCCGG-------------GGCGGGua--GCGGCUG----CG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 11662 | 0.7 | 0.186055 |
Target: 5'- cGUGGCGGCCacaucgagccaCCGCCUcacuccaaAUCGCUGAUcucaaGCa -3' miRNA: 3'- -CGCCGCCGG-----------GGCGGG--------UAGCGGCUG-----CG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 11000 | 0.66 | 0.35764 |
Target: 5'- cGCaaCGGCaCCGCgCCGgacgCGCCGAgGCa -3' miRNA: 3'- -CGccGCCGgGGCG-GGUa---GCGGCUgCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 8550 | 0.67 | 0.306162 |
Target: 5'- uCGGCGGUgUaGCCCAUgCGCCG-CaGCa -3' miRNA: 3'- cGCCGCCGgGgCGGGUA-GCGGCuG-CG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 8372 | 0.7 | 0.181524 |
Target: 5'- gGCGGCGGCCUCGgC-AUCGgCGAgaGCc -3' miRNA: 3'- -CGCCGCCGGGGCgGgUAGCgGCUg-CG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 8023 | 0.67 | 0.288541 |
Target: 5'- cCGGCGGCCaccccguuucgcgaaCUGUCCGacacCGCCGGuCGCc -3' miRNA: 3'- cGCCGCCGG---------------GGCGGGUa---GCGGCU-GCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 7965 | 0.68 | 0.266715 |
Target: 5'- uUGGUGGCCCaCGCCCAcCGCau-UGUu -3' miRNA: 3'- cGCCGCCGGG-GCGGGUaGCGgcuGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 7428 | 0.68 | 0.272992 |
Target: 5'- uCGGCGGUgCCCGCgCCGcauggcagCGCCGAgGa -3' miRNA: 3'- cGCCGCCG-GGGCG-GGUa-------GCGGCUgCg -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 7182 | 0.66 | 0.320269 |
Target: 5'- cCGGCGaguGCCCgGCCU---GCgGACGCa -3' miRNA: 3'- cGCCGC---CGGGgCGGGuagCGgCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 6492 | 0.66 | 0.319552 |
Target: 5'- cGCGGguacugcUGGCCCa---CAUCGaCCGACGCc -3' miRNA: 3'- -CGCC-------GCCGGGgcggGUAGC-GGCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 6407 | 0.72 | 0.144972 |
Target: 5'- gGCGGU-GCCCUgaugugGCCCGaccUCGCCGAUGUc -3' miRNA: 3'- -CGCCGcCGGGG------CGGGU---AGCGGCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 5535 | 0.7 | 0.190686 |
Target: 5'- uGUGGCuGCUCuCGCCCGagGCCG-CGUg -3' miRNA: 3'- -CGCCGcCGGG-GCGGGUagCGGCuGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 4366 | 0.68 | 0.237068 |
Target: 5'- aCGGCacgcccguGCCCUGCUCAUCGCCaa-GCa -3' miRNA: 3'- cGCCGc-------CGGGGCGGGUAGCGGcugCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 4302 | 0.68 | 0.268586 |
Target: 5'- cCGGCGGCCCUGCgaugagcgcgaccaaCCucgUGCCGGaccucguCGCg -3' miRNA: 3'- cGCCGCCGGGGCG---------------GGua-GCGGCU-------GCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 4228 | 0.72 | 0.134362 |
Target: 5'- aGCaGGCcaagcaGGCCCCGCCCAcgUGCCucGACuGCg -3' miRNA: 3'- -CG-CCG------CCGGGGCGGGUa-GCGG--CUG-CG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 4117 | 0.68 | 0.253316 |
Target: 5'- uCGGCGGCCUCGacguggccaagaCCGUCGgCGAguucaaggaCGCg -3' miRNA: 3'- cGCCGCCGGGGCg-----------GGUAGCgGCU---------GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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