Results 101 - 105 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23417 | 5' | -65 | NC_005259.1 | + | 2162 | 0.69 | 0.220638 |
Target: 5'- aGCGGCGucGagCCGCCgGUUGCCGAgGUc -3' miRNA: 3'- -CGCCGC--CggGGCGGgUAGCGGCUgCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 38984 | 0.69 | 0.220638 |
Target: 5'- cGCGGauaCCCUGCCCAgccUCGuuGAgCGCg -3' miRNA: 3'- -CGCCgccGGGGCGGGU---AGCggCU-GCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 43198 | 0.69 | 0.220638 |
Target: 5'- uCGGCGGCgaugucgacgCCCGCCUgaccCGCCGA-GCu -3' miRNA: 3'- cGCCGCCG----------GGGCGGGua--GCGGCUgCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 37065 | 0.69 | 0.226547 |
Target: 5'- gGCGGCGGUguCCaCGUCCA-CGCaccggcggugguguaGACGCg -3' miRNA: 3'- -CGCCGCCG--GG-GCGGGUaGCGg--------------CUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 35521 | 0.68 | 0.260554 |
Target: 5'- cGCcGCcgGGCacaCCGCCCgccGUCGCCGAucCGCc -3' miRNA: 3'- -CGcCG--CCGg--GGCGGG---UAGCGGCU--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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