miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23417 5' -65 NC_005259.1 + 31248 0.75 0.076027
Target:  5'- cGCGGCGGUgCCGCCCcacaCGCCgcaguaggcgGugGCg -3'
miRNA:   3'- -CGCCGCCGgGGCGGGua--GCGG----------CugCG- -5'
23417 5' -65 NC_005259.1 + 60438 0.76 0.066646
Target:  5'- cGgGGCGGCCaCGCCCGacaccUCGauuCCGACGCu -3'
miRNA:   3'- -CgCCGCCGGgGCGGGU-----AGC---GGCUGCG- -5'
23417 5' -65 NC_005259.1 + 60345 0.77 0.058385
Target:  5'- gGCGGCgaucaggucgaGGCCCUGCCCGaaaucccgccaaUCGCCGGacaGCg -3'
miRNA:   3'- -CGCCG-----------CCGGGGCGGGU------------AGCGGCUg--CG- -5'
23417 5' -65 NC_005259.1 + 26674 0.77 0.053914
Target:  5'- cCGGCGGCagCCCGCCCAUCGa-GGCGg -3'
miRNA:   3'- cGCCGCCG--GGGCGGGUAGCggCUGCg -5'
23417 5' -65 NC_005259.1 + 22642 0.79 0.042408
Target:  5'- cGCGuCGGUCgacgCCGCCCAccacaUCGCCGACGCa -3'
miRNA:   3'- -CGCcGCCGG----GGCGGGU-----AGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 24122 0.71 0.160307
Target:  5'- gGCGGgGacuacaccGCCgCCGCCCugcUCGCCGaguuGCGCg -3'
miRNA:   3'- -CGCCgC--------CGG-GGCGGGu--AGCGGC----UGCG- -5'
23417 5' -65 NC_005259.1 + 28938 0.71 0.168512
Target:  5'- aGCaGGCGGCacgauCCugCGCCgCAUCGCCGAgGUc -3'
miRNA:   3'- -CG-CCGCCG-----GG--GCGG-GUAGCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 3137 0.7 0.200252
Target:  5'- aGCGGaCGGCaCCGCCCGUgggacuacaCGgUGAUGCc -3'
miRNA:   3'- -CGCC-GCCGgGGCGGGUA---------GCgGCUGCG- -5'
23417 5' -65 NC_005259.1 + 18534 0.7 0.199764
Target:  5'- uCGGCaaGGCagagCCCGCcgacgaaCCAUCGCCGuACGCc -3'
miRNA:   3'- cGCCG--CCG----GGGCG-------GGUAGCGGC-UGCG- -5'
23417 5' -65 NC_005259.1 + 36864 0.7 0.190686
Target:  5'- uGCGccguuGCuGGCaCCGCCCG-CGCCGACGa -3'
miRNA:   3'- -CGC-----CG-CCGgGGCGGGUaGCGGCUGCg -5'
23417 5' -65 NC_005259.1 + 42919 0.7 0.190686
Target:  5'- uUGGUGGCCUUgagcaugagGCCC-UCGCCGugGg -3'
miRNA:   3'- cGCCGCCGGGG---------CGGGuAGCGGCugCg -5'
23417 5' -65 NC_005259.1 + 5535 0.7 0.190686
Target:  5'- uGUGGCuGCUCuCGCCCGagGCCG-CGUg -3'
miRNA:   3'- -CGCCGcCGGG-GCGGGUagCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 11662 0.7 0.186055
Target:  5'- cGUGGCGGCCacaucgagccaCCGCCUcacuccaaAUCGCUGAUcucaaGCa -3'
miRNA:   3'- -CGCCGCCGG-----------GGCGGG--------UAGCGGCUG-----CG- -5'
23417 5' -65 NC_005259.1 + 67980 0.7 0.186055
Target:  5'- aGCGGCguGGCCaCCGCCgCGagCGUCGACu- -3'
miRNA:   3'- -CGCCG--CCGG-GGCGG-GUa-GCGGCUGcg -5'
23417 5' -65 NC_005259.1 + 61763 0.7 0.186055
Target:  5'- uGCGGCGGCaaucaCCGCCgCAUUcugcacaCCGGCGg -3'
miRNA:   3'- -CGCCGCCGg----GGCGG-GUAGc------GGCUGCg -5'
23417 5' -65 NC_005259.1 + 42473 0.7 0.186055
Target:  5'- aCGGCgaGGCCCgGCCCGUagaGCCGugaccCGUc -3'
miRNA:   3'- cGCCG--CCGGGgCGGGUAg--CGGCu----GCG- -5'
23417 5' -65 NC_005259.1 + 62013 0.7 0.181524
Target:  5'- uGCGGUGuaCCCGCUCGcgcugugUGUCGACGUa -3'
miRNA:   3'- -CGCCGCcgGGGCGGGUa------GCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 8372 0.7 0.181524
Target:  5'- gGCGGCGGCCUCGgC-AUCGgCGAgaGCc -3'
miRNA:   3'- -CGCCGCCGGGGCgGgUAGCgGCUg-CG- -5'
23417 5' -65 NC_005259.1 + 34074 0.7 0.175344
Target:  5'- gGCGGCgguguccacacguaGGCCCUGUaCCAcaucgagaacgugUCGCCgGGCGCg -3'
miRNA:   3'- -CGCCG--------------CCGGGGCG-GGU-------------AGCGG-CUGCG- -5'
23417 5' -65 NC_005259.1 + 38743 0.7 0.172325
Target:  5'- gGCGGUGG-CCCGCCgCAg-GCCGgugagcuGCGCg -3'
miRNA:   3'- -CGCCGCCgGGGCGG-GUagCGGC-------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.