Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23417 | 5' | -65 | NC_005259.1 | + | 44373 | 0.66 | 0.327503 |
Target: 5'- -aGGCucGCCacaCCGCCCAugaugUCGCCGA-GCa -3' miRNA: 3'- cgCCGc-CGG---GGCGGGU-----AGCGGCUgCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 2082 | 0.66 | 0.327503 |
Target: 5'- -gGGCGGgCCUGCUcgauuuCAUCGgCGAgGCc -3' miRNA: 3'- cgCCGCCgGGGCGG------GUAGCgGCUgCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 7182 | 0.66 | 0.320269 |
Target: 5'- cCGGCGaguGCCCgGCCU---GCgGACGCa -3' miRNA: 3'- cGCCGC---CGGGgCGGGuagCGgCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 42611 | 0.66 | 0.320269 |
Target: 5'- uCGGCGGUCaugaGCCCGaUGUCG-CGCg -3' miRNA: 3'- cGCCGCCGGgg--CGGGUaGCGGCuGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 12562 | 0.66 | 0.319552 |
Target: 5'- cGgGGUGGCCcgccagauccaugCCGCCCcacgCGUCGACccauGCg -3' miRNA: 3'- -CgCCGCCGG-------------GGCGGGua--GCGGCUG----CG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 6492 | 0.66 | 0.319552 |
Target: 5'- cGCGGguacugcUGGCCCa---CAUCGaCCGACGCc -3' miRNA: 3'- -CGCC-------GCCGGGgcggGUAGC-GGCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 33127 | 0.67 | 0.315986 |
Target: 5'- cGCGGCaGCCgCCGCgCGUgaucuugccguagacCGCCuGAgGCa -3' miRNA: 3'- -CGCCGcCGG-GGCGgGUA---------------GCGG-CUgCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 19517 | 0.67 | 0.313156 |
Target: 5'- cGCGcGCGGaaauccucaCCgCCGUgCAg-GCCGACGCg -3' miRNA: 3'- -CGC-CGCC---------GG-GGCGgGUagCGGCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 51437 | 0.67 | 0.313156 |
Target: 5'- -gGGCGGgCCacgggGCCUcgCGCCGAUagaGCu -3' miRNA: 3'- cgCCGCCgGGg----CGGGuaGCGGCUG---CG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 43962 | 0.67 | 0.310344 |
Target: 5'- gGCGG-GGCCgCCGCCUgaccgagggcggUGCCGAUGg -3' miRNA: 3'- -CGCCgCCGG-GGCGGGua----------GCGGCUGCg -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 14707 | 0.67 | 0.306162 |
Target: 5'- cGCcGCGacgaacagcacGCCgCGCUCGUCGCCGAgauguaCGCg -3' miRNA: 3'- -CGcCGC-----------CGGgGCGGGUAGCGGCU------GCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 53460 | 0.67 | 0.306162 |
Target: 5'- aCGGCGG-CUgGCUCGUCGuCCGGCccGCc -3' miRNA: 3'- cGCCGCCgGGgCGGGUAGC-GGCUG--CG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 8550 | 0.67 | 0.306162 |
Target: 5'- uCGGCGGUgUaGCCCAUgCGCCG-CaGCa -3' miRNA: 3'- cGCCGCCGgGgCGGGUA-GCGGCuG-CG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 35672 | 0.67 | 0.302024 |
Target: 5'- cGCGGUGguggugcacagcgacGCCgUGCCCggcgagggGUCGCUGACGa -3' miRNA: 3'- -CGCCGC---------------CGGgGCGGG--------UAGCGGCUGCg -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 63612 | 0.67 | 0.299289 |
Target: 5'- aUGGCGGCCaccgaCGCCUgauagAUCaUCGugGCg -3' miRNA: 3'- cGCCGCCGGg----GCGGG-----UAGcGGCugCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 58448 | 0.67 | 0.29725 |
Target: 5'- uCGGUGGCCUuggugaucgCGgCCAccagugcguggcugUCGCCGACGa -3' miRNA: 3'- cGCCGCCGGG---------GCgGGU--------------AGCGGCUGCg -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 66274 | 0.67 | 0.292536 |
Target: 5'- gGCGGCGGCUCaCGCcgccaCCAUCcacuCUGcGCGCa -3' miRNA: 3'- -CGCCGCCGGG-GCG-----GGUAGc---GGC-UGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 29131 | 0.67 | 0.292536 |
Target: 5'- cGCGGCGguauucGCCUCGCUCAccgCGCuCGGCu- -3' miRNA: 3'- -CGCCGC------CGGGGCGGGUa--GCG-GCUGcg -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 8023 | 0.67 | 0.288541 |
Target: 5'- cCGGCGGCCaccccguuucgcgaaCUGUCCGacacCGCCGGuCGCc -3' miRNA: 3'- cGCCGCCGG---------------GGCGGGUa---GCGGCU-GCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 44733 | 0.67 | 0.285902 |
Target: 5'- gGCaGCGcGCCCuCGaCCG-CGCCGAgGCu -3' miRNA: 3'- -CGcCGC-CGGG-GCgGGUaGCGGCUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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