miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23419 5' -57 NC_005259.1 + 26719 0.66 0.691594
Target:  5'- cCUCGACC--AUCG-GGCCGACCUGc- -3'
miRNA:   3'- -GAGUUGGggUGGCuCUGGCUGGACaa -5'
23419 5' -57 NC_005259.1 + 26550 0.66 0.691594
Target:  5'- -aCGAUCUCACCGAGGCUGuaGCCg--- -3'
miRNA:   3'- gaGUUGGGGUGGCUCUGGC--UGGacaa -5'
23419 5' -57 NC_005259.1 + 33895 0.66 0.691594
Target:  5'- --gAACCaCCcgcgcgacggGCCGAGACCGGCCacgGUg -3'
miRNA:   3'- gagUUGG-GG----------UGGCUCUGGCUGGa--CAa -5'
23419 5' -57 NC_005259.1 + 12040 0.66 0.691594
Target:  5'- -gCAACCgguacUCACCGAGGCCGAgcUCUGc- -3'
miRNA:   3'- gaGUUGG-----GGUGGCUCUGGCU--GGACaa -5'
23419 5' -57 NC_005259.1 + 9526 0.66 0.682022
Target:  5'- gUCGACCgCCGCCGGGucaccggagagcugcCCGGCCUc-- -3'
miRNA:   3'- gAGUUGG-GGUGGCUCu--------------GGCUGGAcaa -5'
23419 5' -57 NC_005259.1 + 28647 0.66 0.680956
Target:  5'- -cCGACaCCGCCGAGGCCG-CCg--- -3'
miRNA:   3'- gaGUUGgGGUGGCUCUGGCuGGacaa -5'
23419 5' -57 NC_005259.1 + 5151 0.66 0.67989
Target:  5'- gCUCGACCaCAUCGAcugagggGACCGACCa--- -3'
miRNA:   3'- -GAGUUGGgGUGGCU-------CUGGCUGGacaa -5'
23419 5' -57 NC_005259.1 + 2439 0.66 0.670274
Target:  5'- -aCggUCCCGCCGAGAaaggaacaaCCGACaUGUUc -3'
miRNA:   3'- gaGuuGGGGUGGCUCU---------GGCUGgACAA- -5'
23419 5' -57 NC_005259.1 + 5217 0.66 0.670274
Target:  5'- gCUCGccgagcaauACCCCgacGCUGAGAUCGAUgUGUg -3'
miRNA:   3'- -GAGU---------UGGGG---UGGCUCUGGCUGgACAa -5'
23419 5' -57 NC_005259.1 + 19435 0.66 0.656338
Target:  5'- gCUCGACCUCGCCccgaggcugucaucGAGACCG-CCg--- -3'
miRNA:   3'- -GAGUUGGGGUGG--------------CUCUGGCuGGacaa -5'
23419 5' -57 NC_005259.1 + 44743 0.67 0.638062
Target:  5'- cCUCGACCgCGCCGAGGCU--CUUGa- -3'
miRNA:   3'- -GAGUUGGgGUGGCUCUGGcuGGACaa -5'
23419 5' -57 NC_005259.1 + 48134 0.67 0.638062
Target:  5'- cCUCGACCaCCGCCGcc-CCGGCCa--- -3'
miRNA:   3'- -GAGUUGG-GGUGGCucuGGCUGGacaa -5'
23419 5' -57 NC_005259.1 + 22930 0.67 0.636986
Target:  5'- gCUCGACCUCGCCGGGucaucgcGCCGAUg---- -3'
miRNA:   3'- -GAGUUGGGGUGGCUC-------UGGCUGgacaa -5'
23419 5' -57 NC_005259.1 + 68454 0.67 0.616545
Target:  5'- uCUCGACCagcuuggucaCCGCCGuGACgCGACCUu-- -3'
miRNA:   3'- -GAGUUGG----------GGUGGCuCUG-GCUGGAcaa -5'
23419 5' -57 NC_005259.1 + 30989 0.67 0.605801
Target:  5'- cCUCGuuguCCCCGCCGugGGGCCGgaaCUGUc -3'
miRNA:   3'- -GAGUu---GGGGUGGC--UCUGGCug-GACAa -5'
23419 5' -57 NC_005259.1 + 23749 0.67 0.605801
Target:  5'- -gCGACCCCGacgccCCGcAGACCGGCCc--- -3'
miRNA:   3'- gaGUUGGGGU-----GGC-UCUGGCUGGacaa -5'
23419 5' -57 NC_005259.1 + 25251 0.68 0.546267
Target:  5'- gCUCAugcACCCCACCGAGuacggcacgauggccACCGugCa--- -3'
miRNA:   3'- -GAGU---UGGGGUGGCUC---------------UGGCugGacaa -5'
23419 5' -57 NC_005259.1 + 15786 0.69 0.500832
Target:  5'- aUCAugCuggCCGCCGGGAUCGACCg--- -3'
miRNA:   3'- gAGUugG---GGUGGCUCUGGCUGGacaa -5'
23419 5' -57 NC_005259.1 + 26139 0.7 0.441762
Target:  5'- -cCGACgCCGCCGAGGCCGAgCa--- -3'
miRNA:   3'- gaGUUGgGGUGGCUCUGGCUgGacaa -5'
23419 5' -57 NC_005259.1 + 35879 0.7 0.441762
Target:  5'- -gCAGCCgCCGCCGAGGCaGACCa--- -3'
miRNA:   3'- gaGUUGG-GGUGGCUCUGgCUGGacaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.