miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23420 5' -55 NC_005259.1 + 27390 0.65 0.828499
Target:  5'- cCGGcgGCGGUG-UCGGcagcGGCGGCagcucggugCCCg -3'
miRNA:   3'- -GCUaaUGUCACuAGCCa---CCGCCG---------GGG- -5'
23420 5' -55 NC_005259.1 + 1563 0.66 0.810413
Target:  5'- ----gGCGGUGAcgCuGUGaGCGcGCCCCa -3'
miRNA:   3'- gcuaaUGUCACUa-GcCAC-CGC-CGGGG- -5'
23420 5' -55 NC_005259.1 + 56797 0.66 0.791611
Target:  5'- cCGAUgaACAGaucggGGUCGGUGGCca-CCCa -3'
miRNA:   3'- -GCUAa-UGUCa----CUAGCCACCGccgGGG- -5'
23420 5' -55 NC_005259.1 + 51267 0.66 0.791611
Target:  5'- ----cGCGGUGGUcaCGGUGcGCGGCaagcggcagcgCCCg -3'
miRNA:   3'- gcuaaUGUCACUA--GCCAC-CGCCG-----------GGG- -5'
23420 5' -55 NC_005259.1 + 38165 0.66 0.791611
Target:  5'- cCGAUgACGGUGAUCGGU----GCCUCg -3'
miRNA:   3'- -GCUAaUGUCACUAGCCAccgcCGGGG- -5'
23420 5' -55 NC_005259.1 + 58326 0.67 0.772173
Target:  5'- uGAUcucggGCAGcgaGAUCaGGUcGGUGGCCUCg -3'
miRNA:   3'- gCUAa----UGUCa--CUAG-CCA-CCGCCGGGG- -5'
23420 5' -55 NC_005259.1 + 51068 0.67 0.772173
Target:  5'- uCGA--GCAGcgccUCGGUGGCauGGCCCa -3'
miRNA:   3'- -GCUaaUGUCacu-AGCCACCG--CCGGGg -5'
23420 5' -55 NC_005259.1 + 26818 0.68 0.67909
Target:  5'- cCGGUaccgGCGGUGGUgcCGG-GGCGGUCUg -3'
miRNA:   3'- -GCUAa---UGUCACUA--GCCaCCGCCGGGg -5'
23420 5' -55 NC_005259.1 + 65875 0.69 0.646913
Target:  5'- cCGGUgggGCGGUcaAUCGGcgGGaCGGUCCCg -3'
miRNA:   3'- -GCUAa--UGUCAc-UAGCCa-CC-GCCGGGG- -5'
23420 5' -55 NC_005259.1 + 49633 0.7 0.561193
Target:  5'- uCGGcgGCAGccgcGUCGGcgaUGGCGGCCUCg -3'
miRNA:   3'- -GCUaaUGUCac--UAGCC---ACCGCCGGGG- -5'
23420 5' -55 NC_005259.1 + 61008 0.71 0.509116
Target:  5'- cCGucgACGGUGAgcuuccacUCGGUGGCGGCg-- -3'
miRNA:   3'- -GCuaaUGUCACU--------AGCCACCGCCGggg -5'
23420 5' -55 NC_005259.1 + 58436 0.79 0.187876
Target:  5'- aGAUUGCGcUGAUCGGUGGCcuuggugaucgcGGCCaCCa -3'
miRNA:   3'- gCUAAUGUcACUAGCCACCG------------CCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.