miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23421 3' -62.7 NC_005259.1 + 45624 0.66 0.409069
Target:  5'- uGCCCGCc---GGGCCGGgcagcgcgccGGUGCCg- -3'
miRNA:   3'- gCGGGUGuagcCCCGGCU----------CCACGGau -5'
23421 3' -62.7 NC_005259.1 + 19954 0.66 0.408191
Target:  5'- gCGUCCGCAaCGGcGGCuCGgcgguguGGGUGCCc- -3'
miRNA:   3'- -GCGGGUGUaGCC-CCG-GC-------UCCACGGau -5'
23421 3' -62.7 NC_005259.1 + 16802 0.66 0.40034
Target:  5'- uCGCgUACAucgcgcUCGGGGCCGGGGUcaugauCCg- -3'
miRNA:   3'- -GCGgGUGU------AGCCCCGGCUCCAc-----GGau -5'
23421 3' -62.7 NC_005259.1 + 44947 0.66 0.397744
Target:  5'- gGCaCCAgcgggcagugcgguCAUCGGGauGCCGAGG-GCCg- -3'
miRNA:   3'- gCG-GGU--------------GUAGCCC--CGGCUCCaCGGau -5'
23421 3' -62.7 NC_005259.1 + 46980 0.66 0.39173
Target:  5'- cCGCCgAUgAUC-GGGCCGAGGgugcGCCa- -3'
miRNA:   3'- -GCGGgUG-UAGcCCCGGCUCCa---CGGau -5'
23421 3' -62.7 NC_005259.1 + 35268 0.66 0.39173
Target:  5'- gCGCCCGCcgcgcCGGGgucGCCGAuGUGCCc- -3'
miRNA:   3'- -GCGGGUGua---GCCC---CGGCUcCACGGau -5'
23421 3' -62.7 NC_005259.1 + 8203 0.66 0.390876
Target:  5'- gCGCCCgAUGUCGGGcaacagcgagcguGCgGuGGUGCCg- -3'
miRNA:   3'- -GCGGG-UGUAGCCC-------------CGgCuCCACGGau -5'
23421 3' -62.7 NC_005259.1 + 13392 0.66 0.365003
Target:  5'- cCGaCCCACGcauucgcUCGGccuuccuGGCCGGGGUcGCCg- -3'
miRNA:   3'- -GC-GGGUGU-------AGCC-------CCGGCUCCA-CGGau -5'
23421 3' -62.7 NC_005259.1 + 55530 0.66 0.358521
Target:  5'- uGCCCACAgcgccgccucgUUGGcGUCGAGGaUGCCg- -3'
miRNA:   3'- gCGGGUGU-----------AGCCcCGGCUCC-ACGGau -5'
23421 3' -62.7 NC_005259.1 + 39077 0.67 0.353713
Target:  5'- uGCUgGCGUCGaacaguccguugagcGGGuuGAGGUGCUg- -3'
miRNA:   3'- gCGGgUGUAGC---------------CCCggCUCCACGGau -5'
23421 3' -62.7 NC_005259.1 + 27458 0.67 0.349741
Target:  5'- uCGUCgCGCGggaaaUUGGGGCCGGGGUcggugugGCCa- -3'
miRNA:   3'- -GCGG-GUGU-----AGCCCCGGCUCCA-------CGGau -5'
23421 3' -62.7 NC_005259.1 + 22272 0.67 0.327333
Target:  5'- uGCaUCACGcCGGGGCCGAGGguuuCCa- -3'
miRNA:   3'- gCG-GGUGUaGCCCCGGCUCCac--GGau -5'
23421 3' -62.7 NC_005259.1 + 45748 0.67 0.322832
Target:  5'- gCGCaCCGCcUCGGGgaugagcacgcccucGCCG-GGUGCCa- -3'
miRNA:   3'- -GCG-GGUGuAGCCC---------------CGGCuCCACGGau -5'
23421 3' -62.7 NC_005259.1 + 44475 0.67 0.315433
Target:  5'- cCGCCCugGcCGGGccaguuggugacguaGaCCGGGGUGCCc- -3'
miRNA:   3'- -GCGGGugUaGCCC---------------C-GGCUCCACGGau -5'
23421 3' -62.7 NC_005259.1 + 50387 0.67 0.311782
Target:  5'- gGCCCACguGUCGcGGcucGCCGAgcgcgccGGUGCCUu -3'
miRNA:   3'- gCGGGUG--UAGC-CC---CGGCU-------CCACGGAu -5'
23421 3' -62.7 NC_005259.1 + 44774 0.68 0.287123
Target:  5'- -uCCCGCAUCGGcGGUCGAgaacagacgcucgccGGUGgCCUGg -3'
miRNA:   3'- gcGGGUGUAGCC-CCGGCU---------------CCAC-GGAU- -5'
23421 3' -62.7 NC_005259.1 + 45839 0.68 0.284405
Target:  5'- cCGUCCGCAccacCGGGGCCGGuGGgaccgggcaUGCCg- -3'
miRNA:   3'- -GCGGGUGUa---GCCCCGGCU-CC---------ACGGau -5'
23421 3' -62.7 NC_005259.1 + 68546 0.69 0.264664
Target:  5'- gCGUCgACAUCGGGGugguugagccaaCCGAGGUGgaCCUc -3'
miRNA:   3'- -GCGGgUGUAGCCCC------------GGCUCCAC--GGAu -5'
23421 3' -62.7 NC_005259.1 + 16391 0.69 0.258335
Target:  5'- aGCuCCACAccauaCGGGGgacgcagcccaCCGAGGUGCCc- -3'
miRNA:   3'- gCG-GGUGUa----GCCCC-----------GGCUCCACGGau -5'
23421 3' -62.7 NC_005259.1 + 55024 0.69 0.234252
Target:  5'- uCGUCUcgGCA-CGGGcuGCCGAGGUGCUUGc -3'
miRNA:   3'- -GCGGG--UGUaGCCC--CGGCUCCACGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.