miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23421 5' -57 NC_005259.1 + 14810 0.66 0.695282
Target:  5'- -cCGGGCUgAUGACCGgUGAgg-UGAu -3'
miRNA:   3'- uaGCCCGAgUACUGGCgGCUacaGCU- -5'
23421 5' -57 NC_005259.1 + 30817 0.66 0.663335
Target:  5'- aGUCGGGUagUccGGCgCGCCGAgGUCGGc -3'
miRNA:   3'- -UAGCCCGa-GuaCUG-GCGGCUaCAGCU- -5'
23421 5' -57 NC_005259.1 + 60063 0.67 0.631136
Target:  5'- cUCGGGCUCAggcucgggcGGCuCGCCGAcuuucUCGAu -3'
miRNA:   3'- uAGCCCGAGUa--------CUG-GCGGCUac---AGCU- -5'
23421 5' -57 NC_005259.1 + 38664 0.67 0.620392
Target:  5'- aAUCGaccaccucGCUguUGGCCGCCGG-GUCGAg -3'
miRNA:   3'- -UAGCc-------CGAguACUGGCGGCUaCAGCU- -5'
23421 5' -57 NC_005259.1 + 58908 0.67 0.609658
Target:  5'- cUCGGGCUCGUcGGCgGUCu-UGUCGu -3'
miRNA:   3'- uAGCCCGAGUA-CUGgCGGcuACAGCu -5'
23421 5' -57 NC_005259.1 + 39993 0.67 0.588255
Target:  5'- -aCGGGCUgAUcGCCGCCGAgcaugaggGUCu- -3'
miRNA:   3'- uaGCCCGAgUAcUGGCGGCUa-------CAGcu -5'
23421 5' -57 NC_005259.1 + 50445 0.68 0.577601
Target:  5'- -gCGGGCUCggGGUCGCCGGUcUCGc -3'
miRNA:   3'- uaGCCCGAGuaCUGGCGGCUAcAGCu -5'
23421 5' -57 NC_005259.1 + 23303 0.68 0.577601
Target:  5'- uAUCGGGgUCcgGcGCgGUCGGUGUCGc -3'
miRNA:   3'- -UAGCCCgAGuaC-UGgCGGCUACAGCu -5'
23421 5' -57 NC_005259.1 + 56562 0.68 0.566991
Target:  5'- cUCGGGUUCgGUGAUCGUCGcgGcugCGAu -3'
miRNA:   3'- uAGCCCGAG-UACUGGCGGCuaCa--GCU- -5'
23421 5' -57 NC_005259.1 + 52903 0.68 0.566991
Target:  5'- -aCGGGCaccugcUCAcGACCGCCGAc-UCGAu -3'
miRNA:   3'- uaGCCCG------AGUaCUGGCGGCUacAGCU- -5'
23421 5' -57 NC_005259.1 + 58696 0.68 0.556431
Target:  5'- gGUC-GGCUCGUcGCCGCCGccGUCa- -3'
miRNA:   3'- -UAGcCCGAGUAcUGGCGGCuaCAGcu -5'
23421 5' -57 NC_005259.1 + 36141 0.68 0.553274
Target:  5'- -cCGGGCUguccgucgcCAUGGCCacggugacgaccuuGCCGAgGUCGAg -3'
miRNA:   3'- uaGCCCGA---------GUACUGG--------------CGGCUaCAGCU- -5'
23421 5' -57 NC_005259.1 + 42609 0.69 0.514833
Target:  5'- cAUCGGcGgUCAUGAgC-CCGAUGUCGc -3'
miRNA:   3'- -UAGCC-CgAGUACUgGcGGCUACAGCu -5'
23421 5' -57 NC_005259.1 + 33358 0.69 0.503609
Target:  5'- aAUCGGGCgaggUCAUGAcucuccuaccgguCCGCCGAgcgCGAc -3'
miRNA:   3'- -UAGCCCG----AGUACU-------------GGCGGCUacaGCU- -5'
23421 5' -57 NC_005259.1 + 16696 0.69 0.484481
Target:  5'- -cUGGGCaccgagGUGACCGCCGAgcagGUCGc -3'
miRNA:   3'- uaGCCCGag----UACUGGCGGCUa---CAGCu -5'
23421 5' -57 NC_005259.1 + 23343 0.69 0.484481
Target:  5'- cAUCGGGCUCGaGGCUGCC--UG-CGAg -3'
miRNA:   3'- -UAGCCCGAGUaCUGGCGGcuACaGCU- -5'
23421 5' -57 NC_005259.1 + 52329 0.69 0.474553
Target:  5'- cUCGuGGCUCG-GACaCGCCGGUGUg-- -3'
miRNA:   3'- uAGC-CCGAGUaCUG-GCGGCUACAgcu -5'
23421 5' -57 NC_005259.1 + 7209 0.71 0.376344
Target:  5'- -cCGGGCUgcgguggaucugCGUGAUgaacgacggcagccgCGCCGGUGUCGAg -3'
miRNA:   3'- uaGCCCGA------------GUACUG---------------GCGGCUACAGCU- -5'
23421 5' -57 NC_005259.1 + 42948 0.71 0.372914
Target:  5'- -gUGGGCga--GGCCGCCGuUGUCGAa -3'
miRNA:   3'- uaGCCCGaguaCUGGCGGCuACAGCU- -5'
23421 5' -57 NC_005259.1 + 65162 0.71 0.362752
Target:  5'- -aCGGGC-CAUGGcCCGCCGGgucaaggcgcugGUCGAu -3'
miRNA:   3'- uaGCCCGaGUACU-GGCGGCUa-----------CAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.