miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23422 5' -57.4 NC_005259.1 + 32807 0.66 0.675895
Target:  5'- ----aGGUcGaucccgaCGCACCGCCGUCGAu -3'
miRNA:   3'- caaagCCGaCg------GCGUGGCGGUAGCUc -5'
23422 5' -57.4 NC_005259.1 + 26415 0.66 0.675895
Target:  5'- ---gCGGCggUGCCGCcguagaacgcACCGCCGagCGGGc -3'
miRNA:   3'- caaaGCCG--ACGGCG----------UGGCGGUa-GCUC- -5'
23422 5' -57.4 NC_005259.1 + 14587 0.66 0.675895
Target:  5'- --aUCGcGCUGgC-CACCGaCAUCGAGa -3'
miRNA:   3'- caaAGC-CGACgGcGUGGCgGUAGCUC- -5'
23422 5' -57.4 NC_005259.1 + 7427 0.66 0.673762
Target:  5'- --gUCGGCggUGcCCGCGCCGCauggcagcgcCGAGg -3'
miRNA:   3'- caaAGCCG--AC-GGCGUGGCGgua-------GCUC- -5'
23422 5' -57.4 NC_005259.1 + 17883 0.66 0.665218
Target:  5'- --cUCGGUUGgacccCCGCACCGCgCGcCGAu -3'
miRNA:   3'- caaAGCCGAC-----GGCGUGGCG-GUaGCUc -5'
23422 5' -57.4 NC_005259.1 + 11865 0.66 0.665218
Target:  5'- --gUCGGCgaacgugaccGCCGCACCGUCccaAUCGc- -3'
miRNA:   3'- caaAGCCGa---------CGGCGUGGCGG---UAGCuc -5'
23422 5' -57.4 NC_005259.1 + 7308 0.66 0.665218
Target:  5'- --aUUGGgUGCCcgaguuCACCGCCGUCGc- -3'
miRNA:   3'- caaAGCCgACGGc-----GUGGCGGUAGCuc -5'
23422 5' -57.4 NC_005259.1 + 41250 0.66 0.654511
Target:  5'- ---cCGGUgcGCCuCACCGCCccgGUCGAGc -3'
miRNA:   3'- caaaGCCGa-CGGcGUGGCGG---UAGCUC- -5'
23422 5' -57.4 NC_005259.1 + 60589 0.66 0.654511
Target:  5'- ---aCGGCgaGUCggGUGCCGUCAUCGAGc -3'
miRNA:   3'- caaaGCCGa-CGG--CGUGGCGGUAGCUC- -5'
23422 5' -57.4 NC_005259.1 + 6890 0.66 0.654511
Target:  5'- aUUUCGucgcccGCaacGCaCGCgccGCCGCCAUCGAGa -3'
miRNA:   3'- cAAAGC------CGa--CG-GCG---UGGCGGUAGCUC- -5'
23422 5' -57.4 NC_005259.1 + 52455 0.66 0.643786
Target:  5'- -gUUCGGCggaugGCagacCACCGCCcgcgaauacGUCGAGg -3'
miRNA:   3'- caAAGCCGa----CGgc--GUGGCGG---------UAGCUC- -5'
23422 5' -57.4 NC_005259.1 + 46932 0.66 0.643786
Target:  5'- ---cCGaGCUugcccGCCGCGCCGCCgaccgcGUUGAGc -3'
miRNA:   3'- caaaGC-CGA-----CGGCGUGGCGG------UAGCUC- -5'
23422 5' -57.4 NC_005259.1 + 2476 0.66 0.643786
Target:  5'- -gUUCGucGCUcgccucaaugGCCGCACCGUCGUCa-- -3'
miRNA:   3'- caAAGC--CGA----------CGGCGUGGCGGUAGcuc -5'
23422 5' -57.4 NC_005259.1 + 62868 0.66 0.63305
Target:  5'- --cUCGGCgcgagguagGCCGCuCgGUCAUUGAGc -3'
miRNA:   3'- caaAGCCGa--------CGGCGuGgCGGUAGCUC- -5'
23422 5' -57.4 NC_005259.1 + 38500 0.66 0.63305
Target:  5'- --aUCGGuCUGUagCGgGCCGCCGUUGuAGa -3'
miRNA:   3'- caaAGCC-GACG--GCgUGGCGGUAGC-UC- -5'
23422 5' -57.4 NC_005259.1 + 23644 0.66 0.623386
Target:  5'- gGUUUCGGCccgccgacggcgacgGCUGgACCGCCGacccCGAGc -3'
miRNA:   3'- -CAAAGCCGa--------------CGGCgUGGCGGUa---GCUC- -5'
23422 5' -57.4 NC_005259.1 + 45743 0.66 0.622313
Target:  5'- ----aGGCcG-CGCACCGCC-UCGGGg -3'
miRNA:   3'- caaagCCGaCgGCGUGGCGGuAGCUC- -5'
23422 5' -57.4 NC_005259.1 + 42211 0.67 0.611584
Target:  5'- ---aUGGaugcccGCCGCGCCGCCGUCc-- -3'
miRNA:   3'- caaaGCCga----CGGCGUGGCGGUAGcuc -5'
23422 5' -57.4 NC_005259.1 + 22010 0.67 0.611584
Target:  5'- ---aCGGUcaucgGUCGCACUGCCGUCa-- -3'
miRNA:   3'- caaaGCCGa----CGGCGUGGCGGUAGcuc -5'
23422 5' -57.4 NC_005259.1 + 36973 0.67 0.611584
Target:  5'- --cUCGGC--CCGCACCGCCGaacgUCGc- -3'
miRNA:   3'- caaAGCCGacGGCGUGGCGGU----AGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.