miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23423 3' -60.7 NC_005259.1 + 58564 0.66 0.545188
Target:  5'- cGgGCGGuUGGGCcgg-AUCGCGgcGCGGCu -3'
miRNA:   3'- -CgCGCC-GCCCGuaggUAGCGC--UGCCG- -5'
23423 3' -60.7 NC_005259.1 + 31246 0.7 0.314783
Target:  5'- gGCGCGGCGGuGCcgCCccacaCGCcgcaguaGGCGGUg -3'
miRNA:   3'- -CGCGCCGCC-CGuaGGua---GCG-------CUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 63051 0.7 0.33037
Target:  5'- -aGCaGCGGuGCGUaCAUCGCGAUGaGCu -3'
miRNA:   3'- cgCGcCGCC-CGUAgGUAGCGCUGC-CG- -5'
23423 3' -60.7 NC_005259.1 + 58655 0.69 0.341073
Target:  5'- uCGCGGUagcccggugcaccggGGuGCAgcuUCCAUCGCGGgguCGGCu -3'
miRNA:   3'- cGCGCCG---------------CC-CGU---AGGUAGCGCU---GCCG- -5'
23423 3' -60.7 NC_005259.1 + 59086 0.69 0.346518
Target:  5'- uUGUGGCGGGCAgugaugacguugaugUCAgcaCGCG-CGGCa -3'
miRNA:   3'- cGCGCCGCCCGUa--------------GGUa--GCGCuGCCG- -5'
23423 3' -60.7 NC_005259.1 + 36136 0.69 0.361609
Target:  5'- gGC-CGcCGGGCuGUCCGUCGCcAUGGCc -3'
miRNA:   3'- -CGcGCcGCCCG-UAGGUAGCGcUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 67447 0.69 0.369733
Target:  5'- aGCGCGuCGGGgAUgCCcuuuUCgGCGAUGGCg -3'
miRNA:   3'- -CGCGCcGCCCgUA-GGu---AG-CGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 2038 0.68 0.386352
Target:  5'- aGUGCGGUGGGCGgucaCCGgcacCGagacACGGCg -3'
miRNA:   3'- -CGCGCCGCCCGUa---GGUa---GCgc--UGCCG- -5'
23423 3' -60.7 NC_005259.1 + 39602 0.68 0.394844
Target:  5'- uCGU-GUGGGUGgugCCAUCaGCGACGGUg -3'
miRNA:   3'- cGCGcCGCCCGUa--GGUAG-CGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 13220 0.7 0.308276
Target:  5'- -aGCGGUGGGCcucgaccggCCAcCGUGAgGGCc -3'
miRNA:   3'- cgCGCCGCCCGua-------GGUaGCGCUgCCG- -5'
23423 3' -60.7 NC_005259.1 + 26412 0.71 0.281265
Target:  5'- gGCGCGGCGGuGCcgCCGUagaacgcaccgccgaGCgGGCGGg -3'
miRNA:   3'- -CGCGCCGCC-CGuaGGUAg--------------CG-CUGCCg -5'
23423 3' -60.7 NC_005259.1 + 51671 0.71 0.261161
Target:  5'- gGCGCGuCGGGCA-CgGgcgCGCGAUGGUc -3'
miRNA:   3'- -CGCGCcGCCCGUaGgUa--GCGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 23595 0.77 0.112722
Target:  5'- aGCGUGGCacGGCAguucCCcgCGUGGCGGCa -3'
miRNA:   3'- -CGCGCCGc-CCGUa---GGuaGCGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 32371 0.77 0.112722
Target:  5'- cGUGUagGGCGGGCAcugcccgCCGUCGCGAuagcuCGGCu -3'
miRNA:   3'- -CGCG--CCGCCCGUa------GGUAGCGCU-----GCCG- -5'
23423 3' -60.7 NC_005259.1 + 58950 0.73 0.186522
Target:  5'- aGCGuCGGCcuuggccagcaggucGGGCAgCuCGUCgGCGACGGCg -3'
miRNA:   3'- -CGC-GCCG---------------CCCGUaG-GUAG-CGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 60277 0.73 0.204228
Target:  5'- aGCGCuGcCGGGCggCCAUCGuCGuCGGUg -3'
miRNA:   3'- -CGCGcC-GCCCGuaGGUAGC-GCuGCCG- -5'
23423 3' -60.7 NC_005259.1 + 20348 0.73 0.204228
Target:  5'- gGCG-GGCGGuacuacGCGUCCAccucgUGCGACGGUg -3'
miRNA:   3'- -CGCgCCGCC------CGUAGGUa----GCGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 66258 0.72 0.236969
Target:  5'- aGCGCGGCccGCG-CCGg-GCGGCGGCu -3'
miRNA:   3'- -CGCGCCGccCGUaGGUagCGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 59286 0.71 0.248822
Target:  5'- -aGCGGUGuGCAgaccuacgCUGUCGUGGCGGCa -3'
miRNA:   3'- cgCGCCGCcCGUa-------GGUAGCGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 23288 0.71 0.261161
Target:  5'- gGCGCGGUgguuGGGUaucgggGUCCggCGCGGuCGGUg -3'
miRNA:   3'- -CGCGCCG----CCCG------UAGGuaGCGCU-GCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.