miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23423 3' -60.7 NC_005259.1 + 25500 0.67 0.439062
Target:  5'- cGCGCGuGaGGGCAaaaaggcccUCgaccguggCAUCGCGugGGUg -3'
miRNA:   3'- -CGCGC-CgCCCGU---------AG--------GUAGCGCugCCG- -5'
23423 3' -60.7 NC_005259.1 + 57442 0.68 0.421032
Target:  5'- aCGCGGCGaGGUugGUgCGaCGCuGCGGCa -3'
miRNA:   3'- cGCGCCGC-CCG--UAgGUaGCGcUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 60142 0.68 0.421032
Target:  5'- uGCGCGGCcuuGGCcgCCGccUCaGCGgccucacggGCGGCg -3'
miRNA:   3'- -CGCGCCGc--CCGuaGGU--AG-CGC---------UGCCG- -5'
23423 3' -60.7 NC_005259.1 + 37065 0.68 0.421032
Target:  5'- -gGCGGCGGuGUccacGUCCA-CGCaccGGCGGUg -3'
miRNA:   3'- cgCGCCGCC-CG----UAGGUaGCG---CUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 9126 0.68 0.421032
Target:  5'- cGCGCcccGGUacGGGCAgCCGUgcucgugccCGuCGACGGCa -3'
miRNA:   3'- -CGCG---CCG--CCCGUaGGUA---------GC-GCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 41601 0.68 0.415711
Target:  5'- cGCGCGucgguguuucggaucGCGaGGCugaCCAUgGUGGCGGUg -3'
miRNA:   3'- -CGCGC---------------CGC-CCGua-GGUAgCGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 5721 0.68 0.412186
Target:  5'- aGCGCcggacGGCGGcCAUUC-UCGCGgccaaGCGGCg -3'
miRNA:   3'- -CGCG-----CCGCCcGUAGGuAGCGC-----UGCCG- -5'
23423 3' -60.7 NC_005259.1 + 61737 0.68 0.412186
Target:  5'- -aGCaGGUGuGCGUCCGgcgagaucugUGCGGCGGCa -3'
miRNA:   3'- cgCG-CCGCcCGUAGGUa---------GCGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 67711 0.68 0.409555
Target:  5'- --uCGGCGGGCAUacCCGUCaGCcucgauccgauaccGGCGGCc -3'
miRNA:   3'- cgcGCCGCCCGUA--GGUAG-CG--------------CUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 8959 0.68 0.404324
Target:  5'- cCGUGGaCGGGCAccgugCCGggacguaggugccagCgGCGACGGCa -3'
miRNA:   3'- cGCGCC-GCCCGUa----GGUa--------------G-CGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 63851 0.68 0.40259
Target:  5'- aGCGCguaccGGCGaGGUggCCGgcuggccUUGCGugGGCg -3'
miRNA:   3'- -CGCG-----CCGC-CCGuaGGU-------AGCGCugCCG- -5'
23423 3' -60.7 NC_005259.1 + 39602 0.68 0.394844
Target:  5'- uCGU-GUGGGUGgugCCAUCaGCGACGGUg -3'
miRNA:   3'- cGCGcCGCCCGUa--GGUAG-CGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 27392 0.68 0.394844
Target:  5'- -gGCGGC-GGUGUCgGcaGCGGCGGCa -3'
miRNA:   3'- cgCGCCGcCCGUAGgUagCGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 2038 0.68 0.386352
Target:  5'- aGUGCGGUGGGCGgucaCCGgcacCGagacACGGCg -3'
miRNA:   3'- -CGCGCCGCCCGUa---GGUa---GCgc--UGCCG- -5'
23423 3' -60.7 NC_005259.1 + 67447 0.69 0.369733
Target:  5'- aGCGCGuCGGGgAUgCCcuuuUCgGCGAUGGCg -3'
miRNA:   3'- -CGCGCcGCCCgUA-GGu---AG-CGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 36136 0.69 0.361609
Target:  5'- gGC-CGcCGGGCuGUCCGUCGCcAUGGCc -3'
miRNA:   3'- -CGcGCcGCCCG-UAGGUAGCGcUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 59086 0.69 0.346518
Target:  5'- uUGUGGCGGGCAgugaugacguugaugUCAgcaCGCG-CGGCa -3'
miRNA:   3'- cGCGCCGCCCGUa--------------GGUa--GCGCuGCCG- -5'
23423 3' -60.7 NC_005259.1 + 58655 0.69 0.341073
Target:  5'- uCGCGGUagcccggugcaccggGGuGCAgcuUCCAUCGCGGgguCGGCu -3'
miRNA:   3'- cGCGCCG---------------CC-CGU---AGGUAGCGCU---GCCG- -5'
23423 3' -60.7 NC_005259.1 + 63051 0.7 0.33037
Target:  5'- -aGCaGCGGuGCGUaCAUCGCGAUGaGCu -3'
miRNA:   3'- cgCGcCGCC-CGUAgGUAGCGCUGC-CG- -5'
23423 3' -60.7 NC_005259.1 + 31246 0.7 0.314783
Target:  5'- gGCGCGGCGGuGCcgCCccacaCGCcgcaguaGGCGGUg -3'
miRNA:   3'- -CGCGCCGCC-CGuaGGua---GCG-------CUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.