miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23423 5' -52.3 NC_005259.1 + 5910 0.66 0.901706
Target:  5'- ---gAGgUCGAgGUGCUGCgcacCGUCGa -3'
miRNA:   3'- uaugUCaAGCUgCACGACGa---GCAGCg -5'
23423 5' -52.3 NC_005259.1 + 58677 0.66 0.887406
Target:  5'- gGUGCAGcUUCcaucGCGggGUcgGCUCGUCGCc -3'
miRNA:   3'- -UAUGUC-AAGc---UGCa-CGa-CGAGCAGCG- -5'
23423 5' -52.3 NC_005259.1 + 37556 0.66 0.879856
Target:  5'- uGUGguGUcCGAUGUcGaCUGCUCGcCGCc -3'
miRNA:   3'- -UAUguCAaGCUGCA-C-GACGAGCaGCG- -5'
23423 5' -52.3 NC_005259.1 + 19413 0.67 0.863985
Target:  5'- gAUGCAGggaGAaauCGUGCUcGCUCGaccUCGCc -3'
miRNA:   3'- -UAUGUCaagCU---GCACGA-CGAGC---AGCG- -5'
23423 5' -52.3 NC_005259.1 + 31778 0.67 0.855677
Target:  5'- ------aUCGAUGUGCUGCgccuugaccgCGUCGUc -3'
miRNA:   3'- uaugucaAGCUGCACGACGa---------GCAGCG- -5'
23423 5' -52.3 NC_005259.1 + 58798 0.67 0.846264
Target:  5'- -gGCGGUgauugccUCGGCGggcucgcGCUGCUCGgcacccUCGCc -3'
miRNA:   3'- uaUGUCA-------AGCUGCa------CGACGAGC------AGCG- -5'
23423 5' -52.3 NC_005259.1 + 66766 0.68 0.810748
Target:  5'- --cCAG-UCGACcgccUGCUGCUCGaacgUCGCg -3'
miRNA:   3'- uauGUCaAGCUGc---ACGACGAGC----AGCG- -5'
23423 5' -52.3 NC_005259.1 + 36128 0.68 0.791373
Target:  5'- -aGCAGUUgGGCcgccggGCUGUcCGUCGCc -3'
miRNA:   3'- uaUGUCAAgCUGca----CGACGaGCAGCG- -5'
23423 5' -52.3 NC_005259.1 + 53447 0.69 0.781427
Target:  5'- -aGCAGgugccaccaCGGCG-GCUgGCUCGUCGUc -3'
miRNA:   3'- uaUGUCaa-------GCUGCaCGA-CGAGCAGCG- -5'
23423 5' -52.3 NC_005259.1 + 9489 0.69 0.761074
Target:  5'- -cGCGcaUCGAggcgaggaaCGUGC-GCUCGUCGCg -3'
miRNA:   3'- uaUGUcaAGCU---------GCACGaCGAGCAGCG- -5'
23423 5' -52.3 NC_005259.1 + 8682 0.69 0.740183
Target:  5'- -aACGGggccgccUCGAUGUcGCUGUcgaggUCGUCGCg -3'
miRNA:   3'- uaUGUCa------AGCUGCA-CGACG-----AGCAGCG- -5'
23423 5' -52.3 NC_005259.1 + 49720 0.7 0.686222
Target:  5'- -gGCAGauaUUCGGCGggcggcgagaGCUGCUCGUCa- -3'
miRNA:   3'- uaUGUC---AAGCUGCa---------CGACGAGCAGcg -5'
23423 5' -52.3 NC_005259.1 + 50682 0.73 0.553818
Target:  5'- --uCGGUgcCGACGaggcGCUGCUCGUCGUc -3'
miRNA:   3'- uauGUCAa-GCUGCa---CGACGAGCAGCG- -5'
23423 5' -52.3 NC_005259.1 + 65320 0.73 0.542988
Target:  5'- uGUGCgaagAGUUCGAUGUcgaGCUGCUgugcgcgggcaCGUCGCa -3'
miRNA:   3'- -UAUG----UCAAGCUGCA---CGACGA-----------GCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.