Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23424 | 5' | -57.8 | NC_005259.1 | + | 1233 | 0.71 | 0.333433 |
Target: 5'- aCGAGGACGGCuGCAagacCGGCCuCGGCAu -3' miRNA: 3'- -GCUCCUGUCG-CGUca--GCUGG-GCUGUu -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 14040 | 0.68 | 0.516014 |
Target: 5'- uCGAGcGGCAGCGCAucGUCGGC--GACGAg -3' miRNA: 3'- -GCUC-CUGUCGCGU--CAGCUGggCUGUU- -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 17356 | 0.66 | 0.652196 |
Target: 5'- uCGAGGucggcggcuCGGCGCuggucguGGUCGACUgCGACAc -3' miRNA: 3'- -GCUCCu--------GUCGCG-------UCAGCUGG-GCUGUu -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 18327 | 0.74 | 0.242631 |
Target: 5'- cCGAGGcCGGUGCguucguGGUCGACgCCGACGg -3' miRNA: 3'- -GCUCCuGUCGCG------UCAGCUG-GGCUGUu -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 22376 | 0.66 | 0.610487 |
Target: 5'- -aAGGGCaaaAGCcCGGUCGGCCuCGGCGAc -3' miRNA: 3'- gcUCCUG---UCGcGUCAGCUGG-GCUGUU- -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 23012 | 0.73 | 0.248817 |
Target: 5'- cCGAGGACGGCuCGGucaucgagaUCGaACCCGACGAc -3' miRNA: 3'- -GCUCCUGUCGcGUC---------AGC-UGGGCUGUU- -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 23305 | 0.67 | 0.578557 |
Target: 5'- uCGGGGucCGGCGCGGUCgGugUCGcCGAg -3' miRNA: 3'- -GCUCCu-GUCGCGUCAG-CugGGCuGUU- -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 24900 | 0.66 | 0.621176 |
Target: 5'- cCGAGGACGGCGagcgGGUCuACaCCGAa-- -3' miRNA: 3'- -GCUCCUGUCGCg---UCAGcUG-GGCUguu -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 29051 | 0.67 | 0.557467 |
Target: 5'- aCGAGaGCcgcgAGCGCGGuaUCGGCCCGAUc- -3' miRNA: 3'- -GCUCcUG----UCGCGUC--AGCUGGGCUGuu -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 35314 | 0.67 | 0.557467 |
Target: 5'- cCGAGGGCGGUGUguacgCGACCCcGCGu -3' miRNA: 3'- -GCUCCUGUCGCGuca--GCUGGGcUGUu -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 35658 | 0.69 | 0.479806 |
Target: 5'- gCGAGGGuggcCAGCGCGGUgguggugcacagcgaCGccguGCCCGGCGAg -3' miRNA: 3'- -GCUCCU----GUCGCGUCA---------------GC----UGGGCUGUU- -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 35810 | 0.68 | 0.52627 |
Target: 5'- -cAGGACGGUGCcGUaCGACCCcGCAu -3' miRNA: 3'- gcUCCUGUCGCGuCA-GCUGGGcUGUu -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 39924 | 0.66 | 0.653264 |
Target: 5'- uCGAGGGCcGCGUcgaGGUCGuCCUugguGACGAa -3' miRNA: 3'- -GCUCCUGuCGCG---UCAGCuGGG----CUGUU- -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 41333 | 0.68 | 0.52627 |
Target: 5'- -aAGGGCGGUGCcGUCGgauACCaCGACGAa -3' miRNA: 3'- gcUCCUGUCGCGuCAGC---UGG-GCUGUU- -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 45186 | 0.67 | 0.57221 |
Target: 5'- cCGAGGuCAGCGCGGugaugacgggcgaguUCGcguugaGCCCGAUg- -3' miRNA: 3'- -GCUCCuGUCGCGUC---------------AGC------UGGGCUGuu -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 46595 | 0.66 | 0.614761 |
Target: 5'- cCGAGGcgaGCAGCGC-GUCGuuggcggucuuggugGCCUGACu- -3' miRNA: 3'- -GCUCC---UGUCGCGuCAGC---------------UGGGCUGuu -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 60742 | 0.82 | 0.068183 |
Target: 5'- uCGGGGuccauuuGCAGUGCAGUCGGCUCGGCGAg -3' miRNA: 3'- -GCUCC-------UGUCGCGUCAGCUGGGCUGUU- -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 65660 | 0.66 | 0.610487 |
Target: 5'- cCGAGGucauaGCuGCGCcugucccuacUCGGCCCGACGAg -3' miRNA: 3'- -GCUCC-----UGuCGCGuc--------AGCUGGGCUGUU- -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 66205 | 0.66 | 0.653264 |
Target: 5'- aCGGGucaGGCGCGGUCG-CgCCGACGc -3' miRNA: 3'- -GCUCcugUCGCGUCAGCuG-GGCUGUu -5' |
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23424 | 5' | -57.8 | NC_005259.1 | + | 66512 | 0.66 | 0.653264 |
Target: 5'- uGucGGCGGgGCGGUCccGCCUGACAAg -3' miRNA: 3'- gCucCUGUCgCGUCAGc-UGGGCUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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