Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 19195 | 0.67 | 0.636622 |
Target: 5'- cUCGACaGCGAgcucgugguGCGGGCGGCGacGUGgGACa -3' miRNA: 3'- -AGUUG-CGCU---------CGCCUGCCGU--CGUgUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 42653 | 0.67 | 0.636622 |
Target: 5'- cCGAUGUGGGCGGccacGCGGCuGCuguUGGCg -3' miRNA: 3'- aGUUGCGCUCGCC----UGCCGuCGu--GUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 51274 | 0.68 | 0.625769 |
Target: 5'- gUCAcgguGCGCG-GCaaGCGGCAGCGCccGACa -3' miRNA: 3'- -AGU----UGCGCuCGccUGCCGUCGUG--UUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 27392 | 0.68 | 0.625769 |
Target: 5'- ----gGCG-GCGGuguCGGCAGCgGCGGCa -3' miRNA: 3'- aguugCGCuCGCCu--GCCGUCG-UGUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 2035 | 0.68 | 0.614922 |
Target: 5'- cUCAGUGCG-GUGGGCGGUcaccGGCACcgaGACa -3' miRNA: 3'- -AGUUGCGCuCGCCUGCCG----UCGUG---UUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 68171 | 0.68 | 0.593281 |
Target: 5'- -gGACGCGcGCGcuuUGGCAGCucGCAGCg -3' miRNA: 3'- agUUGCGCuCGCcu-GCCGUCG--UGUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 936 | 0.68 | 0.582504 |
Target: 5'- --uGCGCGAcaGCGGAaaagucgGGCAGCucgcGCAACg -3' miRNA: 3'- aguUGCGCU--CGCCUg------CCGUCG----UGUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 64939 | 0.69 | 0.560012 |
Target: 5'- cCAGCGCGAGgGuggccggguugucGAUGGUcauGCACGGCa -3' miRNA: 3'- aGUUGCGCUCgC-------------CUGCCGu--CGUGUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 5719 | 0.69 | 0.554691 |
Target: 5'- cCAGCGC---CGGACGGCGGCcauucucgcggccaaGCGGCg -3' miRNA: 3'- aGUUGCGcucGCCUGCCGUCG---------------UGUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 6543 | 0.69 | 0.539873 |
Target: 5'- cUCGGgGCGAGCGGugaaGCuguGCGCGGCg -3' miRNA: 3'- -AGUUgCGCUCGCCugc-CGu--CGUGUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 23587 | 0.69 | 0.539873 |
Target: 5'- cCGugGUGAGCguGGcACGGCAGUuccccgcgugGCGGCa -3' miRNA: 3'- aGUugCGCUCG--CC-UGCCGUCG----------UGUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 7340 | 0.69 | 0.523108 |
Target: 5'- --uACGuCGAGgcCGGACagacguucgugcuguGGCAGCACAACa -3' miRNA: 3'- aguUGC-GCUC--GCCUG---------------CCGUCGUGUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 62447 | 0.69 | 0.518947 |
Target: 5'- gCAGCaGUGAGU-GugGGCAGUACAAa -3' miRNA: 3'- aGUUG-CGCUCGcCugCCGUCGUGUUg -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 48440 | 0.7 | 0.498349 |
Target: 5'- -aGGCGCGAGgcaGCGGCAGCGCGu- -3' miRNA: 3'- agUUGCGCUCgccUGCCGUCGUGUug -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 35668 | 0.7 | 0.468164 |
Target: 5'- cCAGCGCG-GUGG-UGGU-GCACAGCg -3' miRNA: 3'- aGUUGCGCuCGCCuGCCGuCGUGUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 64613 | 0.7 | 0.468164 |
Target: 5'- -uGACgGCGAGCGcGACgGGCAGCA--GCg -3' miRNA: 3'- agUUG-CGCUCGC-CUG-CCGUCGUguUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 49992 | 0.71 | 0.455378 |
Target: 5'- -gGAuCGCGuGCGGACGGCugcccucgugcacgGGCGCuGCg -3' miRNA: 3'- agUU-GCGCuCGCCUGCCG--------------UCGUGuUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 15586 | 0.71 | 0.448571 |
Target: 5'- cCAGCGCGA-CGGgccgcaugagcuACGGCAGCcccgaguuGCAGCa -3' miRNA: 3'- aGUUGCGCUcGCC------------UGCCGUCG--------UGUUG- -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 66256 | 0.71 | 0.438946 |
Target: 5'- gCAGCGCGGcccgcGcCGGGCGGCGGCuCAc- -3' miRNA: 3'- aGUUGCGCU-----C-GCCUGCCGUCGuGUug -5' |
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23425 | 3' | -55.9 | NC_005259.1 | + | 58932 | 0.71 | 0.438946 |
Target: 5'- gUCGGCGgGcGCGG-UGGCAGCGuCGGCc -3' miRNA: 3'- -AGUUGCgCuCGCCuGCCGUCGU-GUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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