miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23426 3' -57.2 NC_005259.1 + 61495 0.66 0.712044
Target:  5'- cGCgACCGUUGAGGcgcUCGGuguGCCGGUCg- -3'
miRNA:   3'- cUG-UGGCAGCUCC---AGCU---CGGCUAGgu -5'
23426 3' -57.2 NC_005259.1 + 18165 0.66 0.712044
Target:  5'- uGACGCCGgaucuggcagUCGAGGUCGAccCCGAcaUCgCAc -3'
miRNA:   3'- -CUGUGGC----------AGCUCCAGCUc-GGCU--AG-GU- -5'
23426 3' -57.2 NC_005259.1 + 5900 0.66 0.711007
Target:  5'- cGAC-CaCGUCGAGGUCGAggugcugcgcaccGUCGA-CCGu -3'
miRNA:   3'- -CUGuG-GCAGCUCCAGCU-------------CGGCUaGGU- -5'
23426 3' -57.2 NC_005259.1 + 41405 0.66 0.708932
Target:  5'- cGCGCCGcUCGGGGUgcccacgaugugcaCGGGCCG--CCAu -3'
miRNA:   3'- cUGUGGC-AGCUCCA--------------GCUCGGCuaGGU- -5'
23426 3' -57.2 NC_005259.1 + 46976 0.66 0.701647
Target:  5'- cACGCCGcCGAuGaUCGGGCCGAgggugcgCCAc -3'
miRNA:   3'- cUGUGGCaGCUcC-AGCUCGGCUa------GGU- -5'
23426 3' -57.2 NC_005259.1 + 5492 0.66 0.670118
Target:  5'- aGCGCCGagCGAGGaUCGAGCuacgCGcgCCGc -3'
miRNA:   3'- cUGUGGCa-GCUCC-AGCUCG----GCuaGGU- -5'
23426 3' -57.2 NC_005259.1 + 5331 0.66 0.669061
Target:  5'- cGAUGCCGUUGuGGUggugagauucgcaUGAGCCGA-CCu -3'
miRNA:   3'- -CUGUGGCAGCuCCA-------------GCUCGGCUaGGu -5'
23426 3' -57.2 NC_005259.1 + 40986 0.66 0.663768
Target:  5'- -cUugCGU-GAGGcucgggcuuuauggaUCGGGCCGGUCCAc -3'
miRNA:   3'- cuGugGCAgCUCC---------------AGCUCGGCUAGGU- -5'
23426 3' -57.2 NC_005259.1 + 22995 0.67 0.638288
Target:  5'- cGACGCCGcCGAGGUCaccgaggacGGCuCGGUCa- -3'
miRNA:   3'- -CUGUGGCaGCUCCAGc--------UCG-GCUAGgu -5'
23426 3' -57.2 NC_005259.1 + 51131 0.67 0.631909
Target:  5'- aGAuCACCGUCGGGGcggccaugagcgcguUCGGGuuGA-CCGu -3'
miRNA:   3'- -CU-GUGGCAGCUCC---------------AGCUCggCUaGGU- -5'
23426 3' -57.2 NC_005259.1 + 8383 0.67 0.627656
Target:  5'- cGGCAUCGgCGAGaGccucggCGAGCCGggCCAc -3'
miRNA:   3'- -CUGUGGCaGCUC-Ca-----GCUCGGCuaGGU- -5'
23426 3' -57.2 NC_005259.1 + 18322 0.67 0.627656
Target:  5'- cGACACCGaggccggugcguUCGuGGUCGAcGCCGAc--- -3'
miRNA:   3'- -CUGUGGC------------AGCuCCAGCU-CGGCUaggu -5'
23426 3' -57.2 NC_005259.1 + 62822 0.67 0.617027
Target:  5'- aGCGCCGcuugcccgCGAGGUCGAGCgcgCGGUUg- -3'
miRNA:   3'- cUGUGGCa-------GCUCCAGCUCG---GCUAGgu -5'
23426 3' -57.2 NC_005259.1 + 8700 0.67 0.610654
Target:  5'- -uCGCUGUCGAGGUCGucgcggucaagcguGUCGGUCa- -3'
miRNA:   3'- cuGUGGCAGCUCCAGCu-------------CGGCUAGgu -5'
23426 3' -57.2 NC_005259.1 + 67799 0.68 0.585247
Target:  5'- uGGCACCGcgugCGAGcUUGAGCCcGAUCUu -3'
miRNA:   3'- -CUGUGGCa---GCUCcAGCUCGG-CUAGGu -5'
23426 3' -57.2 NC_005259.1 + 57078 0.68 0.574716
Target:  5'- aACG-CGUCGAGGaugUCGGGUCGAgcgCCAu -3'
miRNA:   3'- cUGUgGCAGCUCC---AGCUCGGCUa--GGU- -5'
23426 3' -57.2 NC_005259.1 + 57208 0.68 0.557961
Target:  5'- cGACGCCGuugaaaaaccgguugUCGGGGUCGGa--GAUCCAc -3'
miRNA:   3'- -CUGUGGC---------------AGCUCCAGCUcggCUAGGU- -5'
23426 3' -57.2 NC_005259.1 + 35619 0.68 0.553794
Target:  5'- cGCugCGUCGAGuaguUCGGGCCGccgCCGc -3'
miRNA:   3'- cUGugGCAGCUCc---AGCUCGGCua-GGU- -5'
23426 3' -57.2 NC_005259.1 + 26435 0.69 0.522862
Target:  5'- cGCACCGcCGAGcGggCGGGCCGGUgggCCGa -3'
miRNA:   3'- cUGUGGCaGCUC-Ca-GCUCGGCUA---GGU- -5'
23426 3' -57.2 NC_005259.1 + 39426 0.69 0.522862
Target:  5'- gGACACCGUCaauGaGUCGAGCgUGAUCgGa -3'
miRNA:   3'- -CUGUGGCAGcu-C-CAGCUCG-GCUAGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.