miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23426 5' -57.1 NC_005259.1 + 18588 0.66 0.711659
Target:  5'- aGCAGACCGaCC--CCGAUGUCUaCGaCa -3'
miRNA:   3'- aCGUUUGGC-GGacGGCUGCAGA-GCgG- -5'
23426 5' -57.1 NC_005259.1 + 15378 0.66 0.711659
Target:  5'- gGCGAGCUGCCgcaaCCGugGcCgCGCa -3'
miRNA:   3'- aCGUUUGGCGGac--GGCugCaGaGCGg -5'
23426 5' -57.1 NC_005259.1 + 44352 0.66 0.711659
Target:  5'- uUGUuccACgGCUcguUGCCGAgG-CUCGCCa -3'
miRNA:   3'- -ACGuu-UGgCGG---ACGGCUgCaGAGCGG- -5'
23426 5' -57.1 NC_005259.1 + 38633 0.66 0.711659
Target:  5'- gGCGGugaCGCCgaGuuGGCGaaCUCGCCg -3'
miRNA:   3'- aCGUUug-GCGGa-CggCUGCa-GAGCGG- -5'
23426 5' -57.1 NC_005259.1 + 45414 0.66 0.711659
Target:  5'- cGCugauGGCCGCC-GCCGcUGcCUCGUa -3'
miRNA:   3'- aCGu---UUGGCGGaCGGCuGCaGAGCGg -5'
23426 5' -57.1 NC_005259.1 + 49987 0.66 0.701216
Target:  5'- cGCAcgGAUCGCgUGCgGACGgcugccCUCGUg -3'
miRNA:   3'- aCGU--UUGGCGgACGgCUGCa-----GAGCGg -5'
23426 5' -57.1 NC_005259.1 + 37730 0.66 0.701216
Target:  5'- gGC--ACCGCC-GCCGACGagcugCUCGaugaCCa -3'
miRNA:   3'- aCGuuUGGCGGaCGGCUGCa----GAGC----GG- -5'
23426 5' -57.1 NC_005259.1 + 57523 0.66 0.701216
Target:  5'- cGCAG--CGCUUGCCGACGgCgauggCGUCc -3'
miRNA:   3'- aCGUUugGCGGACGGCUGCaGa----GCGG- -5'
23426 5' -57.1 NC_005259.1 + 14342 0.66 0.701216
Target:  5'- gUGCGGGCCGCCgacGCCaucaacucACGugucuccgcugaUCUCGUCa -3'
miRNA:   3'- -ACGUUUGGCGGa--CGGc-------UGC------------AGAGCGG- -5'
23426 5' -57.1 NC_005259.1 + 18459 0.66 0.701216
Target:  5'- cGCAcACCGCCgguccugagccgUGcCCGACGccgacgagCUaCGCCg -3'
miRNA:   3'- aCGUuUGGCGG------------AC-GGCUGCa-------GA-GCGG- -5'
23426 5' -57.1 NC_005259.1 + 17231 0.66 0.701216
Target:  5'- aGuCAAAUCGCCaGCCGgucucACG-CUgGCCa -3'
miRNA:   3'- aC-GUUUGGCGGaCGGC-----UGCaGAgCGG- -5'
23426 5' -57.1 NC_005259.1 + 8902 0.66 0.701216
Target:  5'- cGCu--CgGCCUGCUGACGg---GCCg -3'
miRNA:   3'- aCGuuuGgCGGACGGCUGCagagCGG- -5'
23426 5' -57.1 NC_005259.1 + 62822 0.66 0.701216
Target:  5'- aGC--GCCGCUUGCCcgcGAgGUCgagCGCg -3'
miRNA:   3'- aCGuuUGGCGGACGG---CUgCAGa--GCGg -5'
23426 5' -57.1 NC_005259.1 + 6419 0.66 0.69071
Target:  5'- aUGUGGcCCGaCCUcGCCGAUGUCggcacCGUCg -3'
miRNA:   3'- -ACGUUuGGC-GGA-CGGCUGCAGa----GCGG- -5'
23426 5' -57.1 NC_005259.1 + 40829 0.66 0.69071
Target:  5'- cGCAcgaugGGCCGCgUGuuGAUGcCcugCGCCu -3'
miRNA:   3'- aCGU-----UUGGCGgACggCUGCaGa--GCGG- -5'
23426 5' -57.1 NC_005259.1 + 37151 0.66 0.69071
Target:  5'- cGCAuagccgucACCGCCgcgcccGCCGACGcCgCGCg -3'
miRNA:   3'- aCGUu-------UGGCGGa-----CGGCUGCaGaGCGg -5'
23426 5' -57.1 NC_005259.1 + 17460 0.66 0.69071
Target:  5'- gUGCc-ACCGCCcaCCGugGUgaCGCCc -3'
miRNA:   3'- -ACGuuUGGCGGacGGCugCAgaGCGG- -5'
23426 5' -57.1 NC_005259.1 + 23890 0.66 0.69071
Target:  5'- cGCu-GCCGCCcgaGCCGccGCGcC-CGCCg -3'
miRNA:   3'- aCGuuUGGCGGa--CGGC--UGCaGaGCGG- -5'
23426 5' -57.1 NC_005259.1 + 7241 0.66 0.69071
Target:  5'- gGC-AGCCGC--GCCGGUGUCgagugCGCCa -3'
miRNA:   3'- aCGuUUGGCGgaCGGCUGCAGa----GCGG- -5'
23426 5' -57.1 NC_005259.1 + 48125 0.66 0.69071
Target:  5'- aGCAcACCGCCUcgaccaccGCCGcccCGgccaccacCUCGCCc -3'
miRNA:   3'- aCGUuUGGCGGA--------CGGCu--GCa-------GAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.