Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23427 | 3' | -58 | NC_005259.1 | + | 20989 | 0.66 | 0.63305 |
Target: 5'- aCUGcGUGUGGGCCuacuCgGGCGGCGACc- -3' miRNA: 3'- -GAC-CACGCUCGGc---GgCUGUCGUUGug -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 40160 | 0.66 | 0.622313 |
Target: 5'- -cGGUGCccGCC-CCGGCAGCucgaccguCACa -3' miRNA: 3'- gaCCACGcuCGGcGGCUGUCGuu------GUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 1903 | 0.66 | 0.622313 |
Target: 5'- ----cGCGAGCUGCCGAggaAGC-GCGCc -3' miRNA: 3'- gaccaCGCUCGGCGGCUg--UCGuUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 42919 | 0.66 | 0.622313 |
Target: 5'- uUGGUGgccuUGAGCaugaggcccuCGCCGugGGCGAgGCc -3' miRNA: 3'- gACCAC----GCUCG----------GCGGCugUCGUUgUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 44410 | 0.66 | 0.622313 |
Target: 5'- -cGGUGC---CCGCCuGAcCGGCAGCGCc -3' miRNA: 3'- gaCCACGcucGGCGG-CU-GUCGUUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 60302 | 0.66 | 0.622313 |
Target: 5'- -cGGUGCG-GCCaCgGACGGCGAaACc -3' miRNA: 3'- gaCCACGCuCGGcGgCUGUCGUUgUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 56408 | 0.66 | 0.611584 |
Target: 5'- aUGGUGCccGGcCCGCCGagcucaagcagaGCAGCgAGCGCc -3' miRNA: 3'- gACCACGc-UC-GGCGGC------------UGUCG-UUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 20105 | 0.66 | 0.611584 |
Target: 5'- gUGGU--GAGCCGCCGucucaaGGCcGCACu -3' miRNA: 3'- gACCAcgCUCGGCGGCug----UCGuUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 34419 | 0.66 | 0.605154 |
Target: 5'- uUGGUccacGCGAgacgccccucgaugaGCUGCCGACcgGGCAGCGu -3' miRNA: 3'- gACCA----CGCU---------------CGGCGGCUG--UCGUUGUg -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 45525 | 0.66 | 0.600872 |
Target: 5'- -cGGUGUuGGCCGCCGugGcuGCgAGCGg -3' miRNA: 3'- gaCCACGcUCGGCGGCugU--CG-UUGUg -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 43732 | 0.66 | 0.590186 |
Target: 5'- aUGGcgGCcauGCCGCCGAgccgGGCAACAUc -3' miRNA: 3'- gACCa-CGcu-CGGCGGCUg---UCGUUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 59868 | 0.66 | 0.590186 |
Target: 5'- gCUGGcucguUGUG-GCCGaaaCCGGgGGCGACGCg -3' miRNA: 3'- -GACC-----ACGCuCGGC---GGCUgUCGUUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 30707 | 0.67 | 0.568922 |
Target: 5'- -aGcGUGUuguuGCCGCCGACGcGCcGCACg -3' miRNA: 3'- gaC-CACGcu--CGGCGGCUGU-CGuUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 8986 | 0.67 | 0.568922 |
Target: 5'- -aGGUGCcAGCgG-CGACGGCAGC-Cg -3' miRNA: 3'- gaCCACGcUCGgCgGCUGUCGUUGuG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 47605 | 0.67 | 0.562578 |
Target: 5'- uCUGGUcgGCGAgGCugagguucuugucguCGCCGAgGGCAGCGa -3' miRNA: 3'- -GACCA--CGCU-CG---------------GCGGCUgUCGUUGUg -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 67953 | 0.67 | 0.55836 |
Target: 5'- -cGGUGCGGGUugUGCUGuagcgcgcGCAGCGGCGu -3' miRNA: 3'- gaCCACGCUCG--GCGGC--------UGUCGUUGUg -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 47064 | 0.67 | 0.557306 |
Target: 5'- uUGGUgagcgagGCGAG-CGCCGAgacgaugGGCAGCACg -3' miRNA: 3'- gACCA-------CGCUCgGCGGCUg------UCGUUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 8319 | 0.67 | 0.547853 |
Target: 5'- ---uUGUcgGAGCUGCCGACGGCGAUcaGCc -3' miRNA: 3'- gaccACG--CUCGGCGGCUGUCGUUG--UG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 34485 | 0.67 | 0.53741 |
Target: 5'- gUGGUGUcccCCGCCGAC-GCGACGa -3' miRNA: 3'- gACCACGcucGGCGGCUGuCGUUGUg -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 44986 | 0.67 | 0.53741 |
Target: 5'- -cGGUGCGA-CUGCCGA-GGCAcCGCc -3' miRNA: 3'- gaCCACGCUcGGCGGCUgUCGUuGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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