Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23427 | 3' | -58 | NC_005259.1 | + | 55403 | 0.69 | 0.447229 |
Target: 5'- -cGGUgGUGAuGCCGuaGuACAGCAGCACc -3' miRNA: 3'- gaCCA-CGCU-CGGCggC-UGUCGUUGUG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 54720 | 0.69 | 0.41906 |
Target: 5'- cCUGGUacaggacauaGcCGAgGCUGCCGACAGCGAUc- -3' miRNA: 3'- -GACCA----------C-GCU-CGGCGGCUGUCGUUGug -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 51502 | 0.69 | 0.41906 |
Target: 5'- -aGGU-CGAcGCCGCCGAUcuCGACGCg -3' miRNA: 3'- gaCCAcGCU-CGGCGGCUGucGUUGUG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 63035 | 0.69 | 0.409912 |
Target: 5'- ----cGCGAGCUGaCuCGACAGCAGCGg -3' miRNA: 3'- gaccaCGCUCGGC-G-GCUGUCGUUGUg -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 4437 | 0.69 | 0.409004 |
Target: 5'- -aGGU-CGAGCCGCCcgugcgaGugGGCAGCGu -3' miRNA: 3'- gaCCAcGCUCGGCGG-------CugUCGUUGUg -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 36236 | 0.68 | 0.496394 |
Target: 5'- uUGGccagcGCGAGCgccugCGUCGGCAGCGcCACg -3' miRNA: 3'- gACCa----CGCUCG-----GCGGCUGUCGUuGUG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 54618 | 0.68 | 0.486358 |
Target: 5'- -cGGUGCuGAucuGCCGCCcAC-GCGACACc -3' miRNA: 3'- gaCCACG-CU---CGGCGGcUGuCGUUGUG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 40572 | 0.68 | 0.486358 |
Target: 5'- -cGGUGUu-GCUGUCGGCGGCucGCACc -3' miRNA: 3'- gaCCACGcuCGGCGGCUGUCGu-UGUG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 47955 | 0.68 | 0.473456 |
Target: 5'- -cGGUGCcgauGGCCGCCGcgccGCccgcgaauaugccgGGCAGCGCa -3' miRNA: 3'- gaCCACGc---UCGGCGGC----UG--------------UCGUUGUG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 57453 | 0.68 | 0.466581 |
Target: 5'- uUGGUGCGAcGCUGCggcaGGcCGGUGGCACc -3' miRNA: 3'- gACCACGCU-CGGCGg---CU-GUCGUUGUG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 33302 | 0.68 | 0.466581 |
Target: 5'- -cGGcUGCGGcucgaucccGCCGUCGGCGGUcACGCg -3' miRNA: 3'- gaCC-ACGCU---------CGGCGGCUGUCGuUGUG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 8986 | 0.67 | 0.568922 |
Target: 5'- -aGGUGCcAGCgG-CGACGGCAGC-Cg -3' miRNA: 3'- gaCCACGcUCGgCgGCUGUCGUUGuG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 30707 | 0.67 | 0.568922 |
Target: 5'- -aGcGUGUuguuGCCGCCGACGcGCcGCACg -3' miRNA: 3'- gaC-CACGcu--CGGCGGCUGU-CGuUGUG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 47605 | 0.67 | 0.562578 |
Target: 5'- uCUGGUcgGCGAgGCugagguucuugucguCGCCGAgGGCAGCGa -3' miRNA: 3'- -GACCA--CGCU-CG---------------GCGGCUgUCGUUGUg -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 67953 | 0.67 | 0.55836 |
Target: 5'- -cGGUGCGGGUugUGCUGuagcgcgcGCAGCGGCGu -3' miRNA: 3'- gaCCACGCUCG--GCGGC--------UGUCGUUGUg -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 47064 | 0.67 | 0.557306 |
Target: 5'- uUGGUgagcgagGCGAG-CGCCGAgacgaugGGCAGCACg -3' miRNA: 3'- gACCA-------CGCUCgGCGGCUg------UCGUUGUG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 8319 | 0.67 | 0.547853 |
Target: 5'- ---uUGUcgGAGCUGCCGACGGCGAUcaGCc -3' miRNA: 3'- gaccACG--CUCGGCGGCUGUCGUUG--UG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 44986 | 0.67 | 0.53741 |
Target: 5'- -cGGUGCGA-CUGCCGA-GGCAcCGCc -3' miRNA: 3'- gaCCACGCUcGGCGGCUgUCGUuGUG- -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 34485 | 0.67 | 0.53741 |
Target: 5'- gUGGUGUcccCCGCCGAC-GCGACGa -3' miRNA: 3'- gACCACGcucGGCGGCUGuCGUUGUg -5' |
|||||||
23427 | 3' | -58 | NC_005259.1 | + | 20989 | 0.66 | 0.63305 |
Target: 5'- aCUGcGUGUGGGCCuacuCgGGCGGCGACc- -3' miRNA: 3'- -GAC-CACGCUCGGc---GgCUGUCGUUGug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home