miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23427 3' -58 NC_005259.1 + 11129 0.8 0.087475
Target:  5'- -cGGUGCGAGCCGUCGccuGCgGGUAACACu -3'
miRNA:   3'- gaCCACGCUCGGCGGC---UG-UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 18334 0.77 0.135866
Target:  5'- -cGGUGCGuucguGGUcgaCGCCGACGGCGACAUg -3'
miRNA:   3'- gaCCACGC-----UCG---GCGGCUGUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 23638 0.77 0.139596
Target:  5'- -cGGUGUGguuucGGcCCGCCGACGGCGACGg -3'
miRNA:   3'- gaCCACGC-----UC-GGCGGCUGUCGUUGUg -5'
23427 3' -58 NC_005259.1 + 38948 0.75 0.192182
Target:  5'- -cGGUGCcgcuGCCGCCGAgAGCcuGCACg -3'
miRNA:   3'- gaCCACGcu--CGGCGGCUgUCGu-UGUG- -5'
23427 3' -58 NC_005259.1 + 39466 0.75 0.197272
Target:  5'- aCUG--GCGAGCCGUCGucGCGGUAGCACg -3'
miRNA:   3'- -GACcaCGCUCGGCGGC--UGUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 14339 0.74 0.20248
Target:  5'- -cGcGUGCGGGCCGCCGACGcCAucaacuCACg -3'
miRNA:   3'- gaC-CACGCUCGGCGGCUGUcGUu-----GUG- -5'
23427 3' -58 NC_005259.1 + 7894 0.72 0.267952
Target:  5'- -cGG-GC-AGCCGCCGAUAGC-GCACc -3'
miRNA:   3'- gaCCaCGcUCGGCGGCUGUCGuUGUG- -5'
23427 3' -58 NC_005259.1 + 64611 0.72 0.281551
Target:  5'- aCUGacgGCGAGCgCGaCgGGCAGCAGCGCc -3'
miRNA:   3'- -GACca-CGCUCG-GC-GgCUGUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 15374 0.72 0.281551
Target:  5'- uCUGG-GCGAGCUGCCGcaACcguGGCcGCGCa -3'
miRNA:   3'- -GACCaCGCUCGGCGGC--UG---UCGuUGUG- -5'
23427 3' -58 NC_005259.1 + 52776 0.71 0.310378
Target:  5'- -cGGUGuCGGcagcguguGCCGUCGACAGC-ACACc -3'
miRNA:   3'- gaCCAC-GCU--------CGGCGGCUGUCGuUGUG- -5'
23427 3' -58 NC_005259.1 + 12319 0.71 0.325613
Target:  5'- -cGGUGCGcaCCGCCGcCAGCucACGCa -3'
miRNA:   3'- gaCCACGCucGGCGGCuGUCGu-UGUG- -5'
23427 3' -58 NC_005259.1 + 6944 0.71 0.325613
Target:  5'- -aGGccgaGCucGCCGCCGACGGCAuccACACc -3'
miRNA:   3'- gaCCa---CGcuCGGCGGCUGUCGU---UGUG- -5'
23427 3' -58 NC_005259.1 + 21211 0.71 0.332648
Target:  5'- -aGGUGcCGAGCUcauccgaGCCGAguacgccuCGGCAGCGCg -3'
miRNA:   3'- gaCCAC-GCUCGG-------CGGCU--------GUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 6212 0.71 0.333436
Target:  5'- -cGGgGUGAGCCGCCG-CGcCGACACc -3'
miRNA:   3'- gaCCaCGCUCGGCGGCuGUcGUUGUG- -5'
23427 3' -58 NC_005259.1 + 58393 0.71 0.349494
Target:  5'- -cGGUGCGcaccAGCCaCCGGCGGCGAUc- -3'
miRNA:   3'- gaCCACGC----UCGGcGGCUGUCGUUGug -5'
23427 3' -58 NC_005259.1 + 19210 0.7 0.357726
Target:  5'- gUGGUGCGGGCgGC-GACGuGgGACACc -3'
miRNA:   3'- gACCACGCUCGgCGgCUGU-CgUUGUG- -5'
23427 3' -58 NC_005259.1 + 5434 0.7 0.357726
Target:  5'- -aGGUcuGCGcccgcuGCCGCCGACagaucgcaugAGCAGCACc -3'
miRNA:   3'- gaCCA--CGCu-----CGGCGGCUG----------UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 6296 0.7 0.366094
Target:  5'- gUGGUGCG-GUaccgaUGUCGACGGCAugACc -3'
miRNA:   3'- gACCACGCuCG-----GCGGCUGUCGUugUG- -5'
23427 3' -58 NC_005259.1 + 13630 0.7 0.399995
Target:  5'- ---cUGCGGGCCGCucaacguCGACGGCuACGCg -3'
miRNA:   3'- gaccACGCUCGGCG-------GCUGUCGuUGUG- -5'
23427 3' -58 NC_005259.1 + 46570 0.7 0.40089
Target:  5'- aUGGUcGCGGcgucgaccgcGCCGCCcgaGGCgAGCAGCGCg -3'
miRNA:   3'- gACCA-CGCU----------CGGCGG---CUG-UCGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.