miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23427 3' -58 NC_005259.1 + 36236 0.68 0.496394
Target:  5'- uUGGccagcGCGAGCgccugCGUCGGCAGCGcCACg -3'
miRNA:   3'- gACCa----CGCUCG-----GCGGCUGUCGUuGUG- -5'
23427 3' -58 NC_005259.1 + 54618 0.68 0.486358
Target:  5'- -cGGUGCuGAucuGCCGCCcAC-GCGACACc -3'
miRNA:   3'- gaCCACG-CU---CGGCGGcUGuCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 40572 0.68 0.486358
Target:  5'- -cGGUGUu-GCUGUCGGCGGCucGCACc -3'
miRNA:   3'- gaCCACGcuCGGCGGCUGUCGu-UGUG- -5'
23427 3' -58 NC_005259.1 + 47955 0.68 0.473456
Target:  5'- -cGGUGCcgauGGCCGCCGcgccGCccgcgaauaugccgGGCAGCGCa -3'
miRNA:   3'- gaCCACGc---UCGGCGGC----UG--------------UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 57453 0.68 0.466581
Target:  5'- uUGGUGCGAcGCUGCggcaGGcCGGUGGCACc -3'
miRNA:   3'- gACCACGCU-CGGCGg---CU-GUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 33302 0.68 0.466581
Target:  5'- -cGGcUGCGGcucgaucccGCCGUCGGCGGUcACGCg -3'
miRNA:   3'- gaCC-ACGCU---------CGGCGGCUGUCGuUGUG- -5'
23427 3' -58 NC_005259.1 + 55403 0.69 0.447229
Target:  5'- -cGGUgGUGAuGCCGuaGuACAGCAGCACc -3'
miRNA:   3'- gaCCA-CGCU-CGGCggC-UGUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 54720 0.69 0.41906
Target:  5'- cCUGGUacaggacauaGcCGAgGCUGCCGACAGCGAUc- -3'
miRNA:   3'- -GACCA----------C-GCU-CGGCGGCUGUCGUUGug -5'
23427 3' -58 NC_005259.1 + 51502 0.69 0.41906
Target:  5'- -aGGU-CGAcGCCGCCGAUcuCGACGCg -3'
miRNA:   3'- gaCCAcGCU-CGGCGGCUGucGUUGUG- -5'
23427 3' -58 NC_005259.1 + 63035 0.69 0.409912
Target:  5'- ----cGCGAGCUGaCuCGACAGCAGCGg -3'
miRNA:   3'- gaccaCGCUCGGC-G-GCUGUCGUUGUg -5'
23427 3' -58 NC_005259.1 + 4437 0.69 0.409004
Target:  5'- -aGGU-CGAGCCGCCcgugcgaGugGGCAGCGu -3'
miRNA:   3'- gaCCAcGCUCGGCGG-------CugUCGUUGUg -5'
23427 3' -58 NC_005259.1 + 46570 0.7 0.40089
Target:  5'- aUGGUcGCGGcgucgaccgcGCCGCCcgaGGCgAGCAGCGCg -3'
miRNA:   3'- gACCA-CGCU----------CGGCGG---CUG-UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 13630 0.7 0.399995
Target:  5'- ---cUGCGGGCCGCucaacguCGACGGCuACGCg -3'
miRNA:   3'- gaccACGCUCGGCG-------GCUGUCGuUGUG- -5'
23427 3' -58 NC_005259.1 + 6296 0.7 0.366094
Target:  5'- gUGGUGCG-GUaccgaUGUCGACGGCAugACc -3'
miRNA:   3'- gACCACGCuCG-----GCGGCUGUCGUugUG- -5'
23427 3' -58 NC_005259.1 + 5434 0.7 0.357726
Target:  5'- -aGGUcuGCGcccgcuGCCGCCGACagaucgcaugAGCAGCACc -3'
miRNA:   3'- gaCCA--CGCu-----CGGCGGCUG----------UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 19210 0.7 0.357726
Target:  5'- gUGGUGCGGGCgGC-GACGuGgGACACc -3'
miRNA:   3'- gACCACGCUCGgCGgCUGU-CgUUGUG- -5'
23427 3' -58 NC_005259.1 + 58393 0.71 0.349494
Target:  5'- -cGGUGCGcaccAGCCaCCGGCGGCGAUc- -3'
miRNA:   3'- gaCCACGC----UCGGcGGCUGUCGUUGug -5'
23427 3' -58 NC_005259.1 + 6212 0.71 0.333436
Target:  5'- -cGGgGUGAGCCGCCG-CGcCGACACc -3'
miRNA:   3'- gaCCaCGCUCGGCGGCuGUcGUUGUG- -5'
23427 3' -58 NC_005259.1 + 21211 0.71 0.332648
Target:  5'- -aGGUGcCGAGCUcauccgaGCCGAguacgccuCGGCAGCGCg -3'
miRNA:   3'- gaCCAC-GCUCGG-------CGGCU--------GUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 12319 0.71 0.325613
Target:  5'- -cGGUGCGcaCCGCCGcCAGCucACGCa -3'
miRNA:   3'- gaCCACGCucGGCGGCuGUCGu-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.