Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23427 | 3' | -58 | NC_005259.1 | + | 1903 | 0.66 | 0.622313 |
Target: 5'- ----cGCGAGCUGCCGAggaAGC-GCGCc -3' miRNA: 3'- gaccaCGCUCGGCGGCUg--UCGuUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 4437 | 0.69 | 0.409004 |
Target: 5'- -aGGU-CGAGCCGCCcgugcgaGugGGCAGCGu -3' miRNA: 3'- gaCCAcGCUCGGCGG-------CugUCGUUGUg -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 5434 | 0.7 | 0.357726 |
Target: 5'- -aGGUcuGCGcccgcuGCCGCCGACagaucgcaugAGCAGCACc -3' miRNA: 3'- gaCCA--CGCu-----CGGCGGCUG----------UCGUUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 6212 | 0.71 | 0.333436 |
Target: 5'- -cGGgGUGAGCCGCCG-CGcCGACACc -3' miRNA: 3'- gaCCaCGCUCGGCGGCuGUcGUUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 6296 | 0.7 | 0.366094 |
Target: 5'- gUGGUGCG-GUaccgaUGUCGACGGCAugACc -3' miRNA: 3'- gACCACGCuCG-----GCGGCUGUCGUugUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 6944 | 0.71 | 0.325613 |
Target: 5'- -aGGccgaGCucGCCGCCGACGGCAuccACACc -3' miRNA: 3'- gaCCa---CGcuCGGCGGCUGUCGU---UGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 7894 | 0.72 | 0.267952 |
Target: 5'- -cGG-GC-AGCCGCCGAUAGC-GCACc -3' miRNA: 3'- gaCCaCGcUCGGCGGCUGUCGuUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 8319 | 0.67 | 0.547853 |
Target: 5'- ---uUGUcgGAGCUGCCGACGGCGAUcaGCc -3' miRNA: 3'- gaccACG--CUCGGCGGCUGUCGUUG--UG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 8986 | 0.67 | 0.568922 |
Target: 5'- -aGGUGCcAGCgG-CGACGGCAGC-Cg -3' miRNA: 3'- gaCCACGcUCGgCgGCUGUCGUUGuG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 11129 | 0.8 | 0.087475 |
Target: 5'- -cGGUGCGAGCCGUCGccuGCgGGUAACACu -3' miRNA: 3'- gaCCACGCUCGGCGGC---UG-UCGUUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 12319 | 0.71 | 0.325613 |
Target: 5'- -cGGUGCGcaCCGCCGcCAGCucACGCa -3' miRNA: 3'- gaCCACGCucGGCGGCuGUCGu-UGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 13630 | 0.7 | 0.399995 |
Target: 5'- ---cUGCGGGCCGCucaacguCGACGGCuACGCg -3' miRNA: 3'- gaccACGCUCGGCG-------GCUGUCGuUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 14339 | 0.74 | 0.20248 |
Target: 5'- -cGcGUGCGGGCCGCCGACGcCAucaacuCACg -3' miRNA: 3'- gaC-CACGCUCGGCGGCUGUcGUu-----GUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 15374 | 0.72 | 0.281551 |
Target: 5'- uCUGG-GCGAGCUGCCGcaACcguGGCcGCGCa -3' miRNA: 3'- -GACCaCGCUCGGCGGC--UG---UCGuUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 18334 | 0.77 | 0.135866 |
Target: 5'- -cGGUGCGuucguGGUcgaCGCCGACGGCGACAUg -3' miRNA: 3'- gaCCACGC-----UCG---GCGGCUGUCGUUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 19210 | 0.7 | 0.357726 |
Target: 5'- gUGGUGCGGGCgGC-GACGuGgGACACc -3' miRNA: 3'- gACCACGCUCGgCGgCUGU-CgUUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 20105 | 0.66 | 0.611584 |
Target: 5'- gUGGU--GAGCCGCCGucucaaGGCcGCACu -3' miRNA: 3'- gACCAcgCUCGGCGGCug----UCGuUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 20989 | 0.66 | 0.63305 |
Target: 5'- aCUGcGUGUGGGCCuacuCgGGCGGCGACc- -3' miRNA: 3'- -GAC-CACGCUCGGc---GgCUGUCGUUGug -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 21211 | 0.71 | 0.332648 |
Target: 5'- -aGGUGcCGAGCUcauccgaGCCGAguacgccuCGGCAGCGCg -3' miRNA: 3'- gaCCAC-GCUCGG-------CGGCU--------GUCGUUGUG- -5' |
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23427 | 3' | -58 | NC_005259.1 | + | 23638 | 0.77 | 0.139596 |
Target: 5'- -cGGUGUGguuucGGcCCGCCGACGGCGACGg -3' miRNA: 3'- gaCCACGC-----UC-GGCGGCUGUCGUUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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