miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23427 3' -58 NC_005259.1 + 30707 0.67 0.568922
Target:  5'- -aGcGUGUuguuGCCGCCGACGcGCcGCACg -3'
miRNA:   3'- gaC-CACGcu--CGGCGGCUGU-CGuUGUG- -5'
23427 3' -58 NC_005259.1 + 33302 0.68 0.466581
Target:  5'- -cGGcUGCGGcucgaucccGCCGUCGGCGGUcACGCg -3'
miRNA:   3'- gaCC-ACGCU---------CGGCGGCUGUCGuUGUG- -5'
23427 3' -58 NC_005259.1 + 34419 0.66 0.605154
Target:  5'- uUGGUccacGCGAgacgccccucgaugaGCUGCCGACcgGGCAGCGu -3'
miRNA:   3'- gACCA----CGCU---------------CGGCGGCUG--UCGUUGUg -5'
23427 3' -58 NC_005259.1 + 34485 0.67 0.53741
Target:  5'- gUGGUGUcccCCGCCGAC-GCGACGa -3'
miRNA:   3'- gACCACGcucGGCGGCUGuCGUUGUg -5'
23427 3' -58 NC_005259.1 + 36236 0.68 0.496394
Target:  5'- uUGGccagcGCGAGCgccugCGUCGGCAGCGcCACg -3'
miRNA:   3'- gACCa----CGCUCG-----GCGGCUGUCGUuGUG- -5'
23427 3' -58 NC_005259.1 + 38948 0.75 0.192182
Target:  5'- -cGGUGCcgcuGCCGCCGAgAGCcuGCACg -3'
miRNA:   3'- gaCCACGcu--CGGCGGCUgUCGu-UGUG- -5'
23427 3' -58 NC_005259.1 + 39466 0.75 0.197272
Target:  5'- aCUG--GCGAGCCGUCGucGCGGUAGCACg -3'
miRNA:   3'- -GACcaCGCUCGGCGGC--UGUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 40160 0.66 0.622313
Target:  5'- -cGGUGCccGCC-CCGGCAGCucgaccguCACa -3'
miRNA:   3'- gaCCACGcuCGGcGGCUGUCGuu------GUG- -5'
23427 3' -58 NC_005259.1 + 40572 0.68 0.486358
Target:  5'- -cGGUGUu-GCUGUCGGCGGCucGCACc -3'
miRNA:   3'- gaCCACGcuCGGCGGCUGUCGu-UGUG- -5'
23427 3' -58 NC_005259.1 + 42919 0.66 0.622313
Target:  5'- uUGGUGgccuUGAGCaugaggcccuCGCCGugGGCGAgGCc -3'
miRNA:   3'- gACCAC----GCUCG----------GCGGCugUCGUUgUG- -5'
23427 3' -58 NC_005259.1 + 43732 0.66 0.590186
Target:  5'- aUGGcgGCcauGCCGCCGAgccgGGCAACAUc -3'
miRNA:   3'- gACCa-CGcu-CGGCGGCUg---UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 44410 0.66 0.622313
Target:  5'- -cGGUGC---CCGCCuGAcCGGCAGCGCc -3'
miRNA:   3'- gaCCACGcucGGCGG-CU-GUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 44986 0.67 0.53741
Target:  5'- -cGGUGCGA-CUGCCGA-GGCAcCGCc -3'
miRNA:   3'- gaCCACGCUcGGCGGCUgUCGUuGUG- -5'
23427 3' -58 NC_005259.1 + 45525 0.66 0.600872
Target:  5'- -cGGUGUuGGCCGCCGugGcuGCgAGCGg -3'
miRNA:   3'- gaCCACGcUCGGCGGCugU--CG-UUGUg -5'
23427 3' -58 NC_005259.1 + 46570 0.7 0.40089
Target:  5'- aUGGUcGCGGcgucgaccgcGCCGCCcgaGGCgAGCAGCGCg -3'
miRNA:   3'- gACCA-CGCU----------CGGCGG---CUG-UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 47064 0.67 0.557306
Target:  5'- uUGGUgagcgagGCGAG-CGCCGAgacgaugGGCAGCACg -3'
miRNA:   3'- gACCA-------CGCUCgGCGGCUg------UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 47605 0.67 0.562578
Target:  5'- uCUGGUcgGCGAgGCugagguucuugucguCGCCGAgGGCAGCGa -3'
miRNA:   3'- -GACCA--CGCU-CG---------------GCGGCUgUCGUUGUg -5'
23427 3' -58 NC_005259.1 + 47955 0.68 0.473456
Target:  5'- -cGGUGCcgauGGCCGCCGcgccGCccgcgaauaugccgGGCAGCGCa -3'
miRNA:   3'- gaCCACGc---UCGGCGGC----UG--------------UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 51502 0.69 0.41906
Target:  5'- -aGGU-CGAcGCCGCCGAUcuCGACGCg -3'
miRNA:   3'- gaCCAcGCU-CGGCGGCUGucGUUGUG- -5'
23427 3' -58 NC_005259.1 + 52776 0.71 0.310378
Target:  5'- -cGGUGuCGGcagcguguGCCGUCGACAGC-ACACc -3'
miRNA:   3'- gaCCAC-GCU--------CGGCGGCUGUCGuUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.