miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23427 3' -58 NC_005259.1 + 67953 0.67 0.55836
Target:  5'- -cGGUGCGGGUugUGCUGuagcgcgcGCAGCGGCGu -3'
miRNA:   3'- gaCCACGCUCG--GCGGC--------UGUCGUUGUg -5'
23427 3' -58 NC_005259.1 + 64611 0.72 0.281551
Target:  5'- aCUGacgGCGAGCgCGaCgGGCAGCAGCGCc -3'
miRNA:   3'- -GACca-CGCUCG-GC-GgCUGUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 63035 0.69 0.409912
Target:  5'- ----cGCGAGCUGaCuCGACAGCAGCGg -3'
miRNA:   3'- gaccaCGCUCGGC-G-GCUGUCGUUGUg -5'
23427 3' -58 NC_005259.1 + 60302 0.66 0.622313
Target:  5'- -cGGUGCG-GCCaCgGACGGCGAaACc -3'
miRNA:   3'- gaCCACGCuCGGcGgCUGUCGUUgUG- -5'
23427 3' -58 NC_005259.1 + 59868 0.66 0.590186
Target:  5'- gCUGGcucguUGUG-GCCGaaaCCGGgGGCGACGCg -3'
miRNA:   3'- -GACC-----ACGCuCGGC---GGCUgUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 58393 0.71 0.349494
Target:  5'- -cGGUGCGcaccAGCCaCCGGCGGCGAUc- -3'
miRNA:   3'- gaCCACGC----UCGGcGGCUGUCGUUGug -5'
23427 3' -58 NC_005259.1 + 57453 0.68 0.466581
Target:  5'- uUGGUGCGAcGCUGCggcaGGcCGGUGGCACc -3'
miRNA:   3'- gACCACGCU-CGGCGg---CU-GUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 56408 0.66 0.611584
Target:  5'- aUGGUGCccGGcCCGCCGagcucaagcagaGCAGCgAGCGCc -3'
miRNA:   3'- gACCACGc-UC-GGCGGC------------UGUCG-UUGUG- -5'
23427 3' -58 NC_005259.1 + 55403 0.69 0.447229
Target:  5'- -cGGUgGUGAuGCCGuaGuACAGCAGCACc -3'
miRNA:   3'- gaCCA-CGCU-CGGCggC-UGUCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 54720 0.69 0.41906
Target:  5'- cCUGGUacaggacauaGcCGAgGCUGCCGACAGCGAUc- -3'
miRNA:   3'- -GACCA----------C-GCU-CGGCGGCUGUCGUUGug -5'
23427 3' -58 NC_005259.1 + 54618 0.68 0.486358
Target:  5'- -cGGUGCuGAucuGCCGCCcAC-GCGACACc -3'
miRNA:   3'- gaCCACG-CU---CGGCGGcUGuCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 52776 0.71 0.310378
Target:  5'- -cGGUGuCGGcagcguguGCCGUCGACAGC-ACACc -3'
miRNA:   3'- gaCCAC-GCU--------CGGCGGCUGUCGuUGUG- -5'
23427 3' -58 NC_005259.1 + 51502 0.69 0.41906
Target:  5'- -aGGU-CGAcGCCGCCGAUcuCGACGCg -3'
miRNA:   3'- gaCCAcGCU-CGGCGGCUGucGUUGUG- -5'
23427 3' -58 NC_005259.1 + 47955 0.68 0.473456
Target:  5'- -cGGUGCcgauGGCCGCCGcgccGCccgcgaauaugccgGGCAGCGCa -3'
miRNA:   3'- gaCCACGc---UCGGCGGC----UG--------------UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 47605 0.67 0.562578
Target:  5'- uCUGGUcgGCGAgGCugagguucuugucguCGCCGAgGGCAGCGa -3'
miRNA:   3'- -GACCA--CGCU-CG---------------GCGGCUgUCGUUGUg -5'
23427 3' -58 NC_005259.1 + 47064 0.67 0.557306
Target:  5'- uUGGUgagcgagGCGAG-CGCCGAgacgaugGGCAGCACg -3'
miRNA:   3'- gACCA-------CGCUCgGCGGCUg------UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 46570 0.7 0.40089
Target:  5'- aUGGUcGCGGcgucgaccgcGCCGCCcgaGGCgAGCAGCGCg -3'
miRNA:   3'- gACCA-CGCU----------CGGCGG---CUG-UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 45525 0.66 0.600872
Target:  5'- -cGGUGUuGGCCGCCGugGcuGCgAGCGg -3'
miRNA:   3'- gaCCACGcUCGGCGGCugU--CG-UUGUg -5'
23427 3' -58 NC_005259.1 + 44986 0.67 0.53741
Target:  5'- -cGGUGCGA-CUGCCGA-GGCAcCGCc -3'
miRNA:   3'- gaCCACGCUcGGCGGCUgUCGUuGUG- -5'
23427 3' -58 NC_005259.1 + 44410 0.66 0.622313
Target:  5'- -cGGUGC---CCGCCuGAcCGGCAGCGCc -3'
miRNA:   3'- gaCCACGcucGGCGG-CU-GUCGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.