miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23427 3' -58 NC_005259.1 + 54720 0.69 0.41906
Target:  5'- cCUGGUacaggacauaGcCGAgGCUGCCGACAGCGAUc- -3'
miRNA:   3'- -GACCA----------C-GCU-CGGCGGCUGUCGUUGug -5'
23427 3' -58 NC_005259.1 + 51502 0.69 0.41906
Target:  5'- -aGGU-CGAcGCCGCCGAUcuCGACGCg -3'
miRNA:   3'- gaCCAcGCU-CGGCGGCUGucGUUGUG- -5'
23427 3' -58 NC_005259.1 + 63035 0.69 0.409912
Target:  5'- ----cGCGAGCUGaCuCGACAGCAGCGg -3'
miRNA:   3'- gaccaCGCUCGGC-G-GCUGUCGUUGUg -5'
23427 3' -58 NC_005259.1 + 4437 0.69 0.409004
Target:  5'- -aGGU-CGAGCCGCCcgugcgaGugGGCAGCGu -3'
miRNA:   3'- gaCCAcGCUCGGCGG-------CugUCGUUGUg -5'
23427 3' -58 NC_005259.1 + 46570 0.7 0.40089
Target:  5'- aUGGUcGCGGcgucgaccgcGCCGCCcgaGGCgAGCAGCGCg -3'
miRNA:   3'- gACCA-CGCU----------CGGCGG---CUG-UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 13630 0.7 0.399995
Target:  5'- ---cUGCGGGCCGCucaacguCGACGGCuACGCg -3'
miRNA:   3'- gaccACGCUCGGCG-------GCUGUCGuUGUG- -5'
23427 3' -58 NC_005259.1 + 6296 0.7 0.366094
Target:  5'- gUGGUGCG-GUaccgaUGUCGACGGCAugACc -3'
miRNA:   3'- gACCACGCuCG-----GCGGCUGUCGUugUG- -5'
23427 3' -58 NC_005259.1 + 19210 0.7 0.357726
Target:  5'- gUGGUGCGGGCgGC-GACGuGgGACACc -3'
miRNA:   3'- gACCACGCUCGgCGgCUGU-CgUUGUG- -5'
23427 3' -58 NC_005259.1 + 5434 0.7 0.357726
Target:  5'- -aGGUcuGCGcccgcuGCCGCCGACagaucgcaugAGCAGCACc -3'
miRNA:   3'- gaCCA--CGCu-----CGGCGGCUG----------UCGUUGUG- -5'
23427 3' -58 NC_005259.1 + 58393 0.71 0.349494
Target:  5'- -cGGUGCGcaccAGCCaCCGGCGGCGAUc- -3'
miRNA:   3'- gaCCACGC----UCGGcGGCUGUCGUUGug -5'
23427 3' -58 NC_005259.1 + 11129 0.8 0.087475
Target:  5'- -cGGUGCGAGCCGUCGccuGCgGGUAACACu -3'
miRNA:   3'- gaCCACGCUCGGCGGC---UG-UCGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.