Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23427 | 5' | -52.9 | NC_005259.1 | + | 48480 | 0.66 | 0.910999 |
Target: 5'- uCGCGUCGGCcuguuCCucgACGcGCuuGAGGGCCg -3' miRNA: 3'- cGCGCAGCUGau---GG---UGC-CG--UUCUUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 5556 | 0.66 | 0.910999 |
Target: 5'- cCGCGUgGGgUGgUgACGGCGAGAccguGCCg -3' miRNA: 3'- cGCGCAgCUgAUgG-UGCCGUUCU----UGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 27091 | 0.66 | 0.904501 |
Target: 5'- cUGCGgCGGCUGCCauGCGGU--GGGCUg -3' miRNA: 3'- cGCGCaGCUGAUGG--UGCCGuuCUUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 22889 | 0.66 | 0.897738 |
Target: 5'- cGCGCGcugCGuCUguACgACGGCAAGcaggauGCCc -3' miRNA: 3'- -CGCGCa--GCuGA--UGgUGCCGUUCu-----UGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 34036 | 0.66 | 0.893555 |
Target: 5'- cGUGCGUCGGCgcguucUuguuggcauuguccgACCACGGCGGcGGuguCCa -3' miRNA: 3'- -CGCGCAGCUG------A---------------UGGUGCCGUU-CUu--GG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 41601 | 0.66 | 0.890714 |
Target: 5'- cGCGCGUCGguguuucggaucGCgaggcugACCAUGGUGgcGGuGCCg -3' miRNA: 3'- -CGCGCAGC------------UGa------UGGUGCCGU--UCuUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 23650 | 0.66 | 0.890714 |
Target: 5'- gGCcCGcCGACgGCgACGGCu-GGACCg -3' miRNA: 3'- -CGcGCaGCUGaUGgUGCCGuuCUUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 62847 | 0.66 | 0.890714 |
Target: 5'- cGCGCgGUUGACgagcaGCCGCucggcGCGAGGuagGCCg -3' miRNA: 3'- -CGCG-CAGCUGa----UGGUGc----CGUUCU---UGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 50676 | 0.66 | 0.886377 |
Target: 5'- aGCGCGUCGG-UGCCGacgaGGCGcuGcucgucgucgcgcuuGAGCCg -3' miRNA: 3'- -CGCGCAGCUgAUGGUg---CCGU--U---------------CUUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 13598 | 0.66 | 0.883434 |
Target: 5'- aCGU-UCGauugccGCUACCACGGCAAccacaucugcGGGCCg -3' miRNA: 3'- cGCGcAGC------UGAUGGUGCCGUU----------CUUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 16682 | 0.66 | 0.883434 |
Target: 5'- uGUG-GUCGGCgauCCugGGCAccgAGGugACCg -3' miRNA: 3'- -CGCgCAGCUGau-GGugCCGU---UCU--UGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 29029 | 0.66 | 0.883434 |
Target: 5'- uGCG-GUCGAacccugACCaACGaCGAGAGCCg -3' miRNA: 3'- -CGCgCAGCUga----UGG-UGCcGUUCUUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 4460 | 0.66 | 0.883434 |
Target: 5'- gGCaGCGUaugGGCcaagGCCAuCGGCGGuGGACCa -3' miRNA: 3'- -CG-CGCAg--CUGa---UGGU-GCCGUU-CUUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 45792 | 0.66 | 0.882692 |
Target: 5'- cCGCGUUGACgguguccUGCUugGGUgcGuAGCCg -3' miRNA: 3'- cGCGCAGCUG-------AUGGugCCGuuC-UUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 23068 | 0.67 | 0.875902 |
Target: 5'- -aGCGaccCGAC-ACCcaagcucguuCGGCAGGGACCg -3' miRNA: 3'- cgCGCa--GCUGaUGGu---------GCCGUUCUUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 51154 | 0.67 | 0.875902 |
Target: 5'- aGCGCGuUCGGgUugACCGUGGC--GAGCCa -3' miRNA: 3'- -CGCGC-AGCUgA--UGGUGCCGuuCUUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 49643 | 0.67 | 0.875902 |
Target: 5'- cCGCGUCGGCgAUgGCGGCcucGAuacgcGCCu -3' miRNA: 3'- cGCGCAGCUGaUGgUGCCGuu-CU-----UGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 60567 | 0.67 | 0.875902 |
Target: 5'- gGUGCcgacgGUCaGGCggcCCACGGCGAGucggguGCCg -3' miRNA: 3'- -CGCG-----CAG-CUGau-GGUGCCGUUCu-----UGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 8776 | 0.67 | 0.875902 |
Target: 5'- aGCGCGgcggugaugagcUCGGC--CCGCuuGGCGAGGAUCu -3' miRNA: 3'- -CGCGC------------AGCUGauGGUG--CCGUUCUUGG- -5' |
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23427 | 5' | -52.9 | NC_005259.1 | + | 59423 | 0.67 | 0.875902 |
Target: 5'- -gGCGUCGGCgGCCAUG--AAGAACg -3' miRNA: 3'- cgCGCAGCUGaUGGUGCcgUUCUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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