miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23427 5' -52.9 NC_005259.1 + 48480 0.66 0.910999
Target:  5'- uCGCGUCGGCcuguuCCucgACGcGCuuGAGGGCCg -3'
miRNA:   3'- cGCGCAGCUGau---GG---UGC-CG--UUCUUGG- -5'
23427 5' -52.9 NC_005259.1 + 23650 0.66 0.890714
Target:  5'- gGCcCGcCGACgGCgACGGCu-GGACCg -3'
miRNA:   3'- -CGcGCaGCUGaUGgUGCCGuuCUUGG- -5'
23427 5' -52.9 NC_005259.1 + 29029 0.66 0.883434
Target:  5'- uGCG-GUCGAacccugACCaACGaCGAGAGCCg -3'
miRNA:   3'- -CGCgCAGCUga----UGG-UGCcGUUCUUGG- -5'
23427 5' -52.9 NC_005259.1 + 16682 0.66 0.883434
Target:  5'- uGUG-GUCGGCgauCCugGGCAccgAGGugACCg -3'
miRNA:   3'- -CGCgCAGCUGau-GGugCCGU---UCU--UGG- -5'
23427 5' -52.9 NC_005259.1 + 27091 0.66 0.904501
Target:  5'- cUGCGgCGGCUGCCauGCGGU--GGGCUg -3'
miRNA:   3'- cGCGCaGCUGAUGG--UGCCGuuCUUGG- -5'
23427 5' -52.9 NC_005259.1 + 62847 0.66 0.890714
Target:  5'- cGCGCgGUUGACgagcaGCCGCucggcGCGAGGuagGCCg -3'
miRNA:   3'- -CGCG-CAGCUGa----UGGUGc----CGUUCU---UGG- -5'
23427 5' -52.9 NC_005259.1 + 4460 0.66 0.883434
Target:  5'- gGCaGCGUaugGGCcaagGCCAuCGGCGGuGGACCa -3'
miRNA:   3'- -CG-CGCAg--CUGa---UGGU-GCCGUU-CUUGG- -5'
23427 5' -52.9 NC_005259.1 + 50676 0.66 0.886377
Target:  5'- aGCGCGUCGG-UGCCGacgaGGCGcuGcucgucgucgcgcuuGAGCCg -3'
miRNA:   3'- -CGCGCAGCUgAUGGUg---CCGU--U---------------CUUGG- -5'
23427 5' -52.9 NC_005259.1 + 13598 0.66 0.883434
Target:  5'- aCGU-UCGauugccGCUACCACGGCAAccacaucugcGGGCCg -3'
miRNA:   3'- cGCGcAGC------UGAUGGUGCCGUU----------CUUGG- -5'
23427 5' -52.9 NC_005259.1 + 5556 0.66 0.910999
Target:  5'- cCGCGUgGGgUGgUgACGGCGAGAccguGCCg -3'
miRNA:   3'- cGCGCAgCUgAUgG-UGCCGUUCU----UGG- -5'
23427 5' -52.9 NC_005259.1 + 22889 0.66 0.897738
Target:  5'- cGCGCGcugCGuCUguACgACGGCAAGcaggauGCCc -3'
miRNA:   3'- -CGCGCa--GCuGA--UGgUGCCGUUCu-----UGG- -5'
23427 5' -52.9 NC_005259.1 + 45792 0.66 0.882692
Target:  5'- cCGCGUUGACgguguccUGCUugGGUgcGuAGCCg -3'
miRNA:   3'- cGCGCAGCUG-------AUGGugCCGuuC-UUGG- -5'
23427 5' -52.9 NC_005259.1 + 41601 0.66 0.890714
Target:  5'- cGCGCGUCGguguuucggaucGCgaggcugACCAUGGUGgcGGuGCCg -3'
miRNA:   3'- -CGCGCAGC------------UGa------UGGUGCCGU--UCuUGG- -5'
23427 5' -52.9 NC_005259.1 + 34036 0.66 0.893555
Target:  5'- cGUGCGUCGGCgcguucUuguuggcauuguccgACCACGGCGGcGGuguCCa -3'
miRNA:   3'- -CGCGCAGCUG------A---------------UGGUGCCGUU-CUu--GG- -5'
23427 5' -52.9 NC_005259.1 + 3065 0.67 0.851857
Target:  5'- --cCGUCGACggGCCGaGGCcgacaaGAGAGCCg -3'
miRNA:   3'- cgcGCAGCUGa-UGGUgCCG------UUCUUGG- -5'
23427 5' -52.9 NC_005259.1 + 51154 0.67 0.875902
Target:  5'- aGCGCGuUCGGgUugACCGUGGC--GAGCCa -3'
miRNA:   3'- -CGCGC-AGCUgA--UGGUGCCGuuCUUGG- -5'
23427 5' -52.9 NC_005259.1 + 58581 0.67 0.860107
Target:  5'- uCGCGgcgCGGCUGCCG-GGCcGGAucuuuucgagcGCCu -3'
miRNA:   3'- cGCGCa--GCUGAUGGUgCCGuUCU-----------UGG- -5'
23427 5' -52.9 NC_005259.1 + 43317 0.67 0.860107
Target:  5'- gGCuGCGUUGGCcACCGCcuuGGCGAuGGGCa -3'
miRNA:   3'- -CG-CGCAGCUGaUGGUG---CCGUU-CUUGg -5'
23427 5' -52.9 NC_005259.1 + 31052 0.67 0.860919
Target:  5'- aCGCGUCGACcACauaguugaucggguCGGCGAGGuucCCg -3'
miRNA:   3'- cGCGCAGCUGaUGgu------------GCCGUUCUu--GG- -5'
23427 5' -52.9 NC_005259.1 + 60567 0.67 0.875902
Target:  5'- gGUGCcgacgGUCaGGCggcCCACGGCGAGucggguGCCg -3'
miRNA:   3'- -CGCG-----CAG-CUGau-GGUGCCGUUCu-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.