Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23428 | 3' | -56.2 | NC_005259.1 | + | 68842 | 0.66 | 0.710881 |
Target: 5'- gUCGGugaGGUGggCCAucAUGUCGAcuugcCCGCGCc -3' miRNA: 3'- aAGCC---CCACa-GGU--UGCAGUU-----GGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 49220 | 0.66 | 0.700344 |
Target: 5'- -gCGGGGUuuacucgucGUCgGAC-UCGACCGCuGCc -3' miRNA: 3'- aaGCCCCA---------CAGgUUGcAGUUGGCG-CG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 55820 | 0.66 | 0.752182 |
Target: 5'- cUCGGGGUaggCCGccGCGUCcucgaCGCGUg -3' miRNA: 3'- aAGCCCCAca-GGU--UGCAGuug--GCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 13422 | 0.66 | 0.721344 |
Target: 5'- -cCGGGGUcgCCGcCGg-GGCCGCGCu -3' miRNA: 3'- aaGCCCCAcaGGUuGCagUUGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 36952 | 0.66 | 0.752182 |
Target: 5'- -cCGGGGUG-CCcGCGagaccgccUCGGCC-CGCa -3' miRNA: 3'- aaGCCCCACaGGuUGC--------AGUUGGcGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 63440 | 0.66 | 0.742005 |
Target: 5'- cUCGGGcGagacaucgagGcCCAugGcCAACCGCGUg -3' miRNA: 3'- aAGCCC-Ca---------CaGGUugCaGUUGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 32654 | 0.66 | 0.725506 |
Target: 5'- -cCGGGGUGgggaaaucgucggcaUCCGAcucgcaauCGUCGuaGCCGgGCg -3' miRNA: 3'- aaGCCCCAC---------------AGGUU--------GCAGU--UGGCgCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 67423 | 0.66 | 0.710881 |
Target: 5'- aUCGGGGUG-CCGggcucACGcUUGAgCGCGUc -3' miRNA: 3'- aAGCCCCACaGGU-----UGC-AGUUgGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 45461 | 0.66 | 0.710881 |
Target: 5'- aUCGGGGUGcCgAACGg--GCCGaGCu -3' miRNA: 3'- aAGCCCCACaGgUUGCaguUGGCgCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 738 | 0.66 | 0.710881 |
Target: 5'- -cCGGcGGUGccuacgCCGccggugccuaccGCGUCcACCGCGCc -3' miRNA: 3'- aaGCC-CCACa-----GGU------------UGCAGuUGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 46572 | 0.67 | 0.67909 |
Target: 5'- -------gGUCgCGGCGUCGACCGCGCc -3' miRNA: 3'- aagccccaCAG-GUUGCAGUUGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 5560 | 0.67 | 0.668393 |
Target: 5'- -gUGGGGUGgugaCGGCGa-GACCGUGCc -3' miRNA: 3'- aaGCCCCACag--GUUGCagUUGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 26983 | 0.67 | 0.66625 |
Target: 5'- cUCGGcGGUGUagacguUCGACGUUucggucuugaacGCCGCGCc -3' miRNA: 3'- aAGCC-CCACA------GGUUGCAGu-----------UGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 6349 | 0.67 | 0.646913 |
Target: 5'- -aCGGGGUG-CCGuacgugcgcACGUUGucGCCGgGCg -3' miRNA: 3'- aaGCCCCACaGGU---------UGCAGU--UGGCgCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 68554 | 0.67 | 0.646913 |
Target: 5'- aUCGGGGUGguugagCCAACcgagGUgGACCuCGUa -3' miRNA: 3'- aAGCCCCACa-----GGUUG----CAgUUGGcGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 37066 | 0.67 | 0.646913 |
Target: 5'- -gCGGcGGUGUCC-ACGUCcacgcACCG-GCg -3' miRNA: 3'- aaGCC-CCACAGGuUGCAGu----UGGCgCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 41412 | 0.67 | 0.636148 |
Target: 5'- cUCGGGGUGcCCAcgAUGUgCAcggGCCGC-Ca -3' miRNA: 3'- aAGCCCCACaGGU--UGCA-GU---UGGCGcG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 909 | 0.67 | 0.636148 |
Target: 5'- --aGGuGGUGcCCGGCGaUCAccugcuGCUGCGCg -3' miRNA: 3'- aagCC-CCACaGGUUGC-AGU------UGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 64234 | 0.68 | 0.593146 |
Target: 5'- aUCGGGGUcgauagCCGACGggaUCAACguggUGCGCg -3' miRNA: 3'- aAGCCCCAca----GGUUGC---AGUUG----GCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 37905 | 0.69 | 0.540152 |
Target: 5'- aUCGGGGUGUuaCCGAUGUaacgcccACCGCu- -3' miRNA: 3'- aAGCCCCACA--GGUUGCAgu-----UGGCGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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