Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23428 | 3' | -56.2 | NC_005259.1 | + | 37905 | 0.69 | 0.540152 |
Target: 5'- aUCGGGGUGUuaCCGAUGUaacgcccACCGCu- -3' miRNA: 3'- aAGCCCCACA--GGUUGCAgu-----UGGCGcg -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 15879 | 0.69 | 0.519383 |
Target: 5'- aUCGGGcacaCCGAagaGUCGACUGCGCa -3' miRNA: 3'- aAGCCCcacaGGUUg--CAGUUGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 47951 | 0.7 | 0.498936 |
Target: 5'- -aCGGcGGUG-CCGAUGgCcGCCGCGCc -3' miRNA: 3'- aaGCC-CCACaGGUUGCaGuUGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 55745 | 0.7 | 0.488848 |
Target: 5'- cUUGGuGGUGUCgAgaccguGCG-CAGCCGCGUa -3' miRNA: 3'- aAGCC-CCACAGgU------UGCaGUUGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 40706 | 0.7 | 0.488848 |
Target: 5'- aUCGGGGUGcCCGccaccACgGUCcACCGCaGCc -3' miRNA: 3'- aAGCCCCACaGGU-----UG-CAGuUGGCG-CG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 4481 | 0.7 | 0.488848 |
Target: 5'- aUCGGcGGUGgaCCAugGUgAucgccACCGCGCc -3' miRNA: 3'- aAGCC-CCACa-GGUugCAgU-----UGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 53192 | 0.7 | 0.47985 |
Target: 5'- gUCGcGGUGUCCccggcgaucagauucGCGUCGcCCGCGCc -3' miRNA: 3'- aAGCcCCACAGGu--------------UGCAGUuGGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 57319 | 0.71 | 0.421174 |
Target: 5'- -cCGGcGGUGUCgguGugGUCAugUGCGCu -3' miRNA: 3'- aaGCC-CCACAGg--UugCAGUugGCGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 12561 | 0.71 | 0.411972 |
Target: 5'- -cCGGGGUGgcccgccagaUCCAugccgccccacGCGUCGACCcauGCGCc -3' miRNA: 3'- aaGCCCCAC----------AGGU-----------UGCAGUUGG---CGCG- -5' |
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23428 | 3' | -56.2 | NC_005259.1 | + | 37553 | 0.74 | 0.30436 |
Target: 5'- -gCGuGuGGUGUCCGAUGUCGAcugcucgccgcCCGCGCc -3' miRNA: 3'- aaGC-C-CCACAGGUUGCAGUU-----------GGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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