miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23428 5' -56.7 NC_005259.1 + 7238 0.67 0.611863
Target:  5'- -gACGgCAGCCGCGCCGGUgucgaguGcGCCAa -3'
miRNA:   3'- caUGCaGUUGGUGUGGCCGu------C-CGGUg -5'
23428 5' -56.7 NC_005259.1 + 46769 0.67 0.601067
Target:  5'- cUGCGccgaCAGCCGCGCCcGCcGGGCCGa -3'
miRNA:   3'- cAUGCa---GUUGGUGUGGcCG-UCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 30152 0.68 0.579561
Target:  5'- -aGC-UCGACCGgGCCGccuaCAGGCCGCc -3'
miRNA:   3'- caUGcAGUUGGUgUGGCc---GUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 62856 0.68 0.579561
Target:  5'- -gACGagCAGCCGCucgGCgcgaGGUAGGCCGCu -3'
miRNA:   3'- caUGCa-GUUGGUG---UGg---CCGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 21272 0.68 0.547635
Target:  5'- gGU-CGUCGGCCugA-CGaGCAGGCCGa -3'
miRNA:   3'- -CAuGCAGUUGGugUgGC-CGUCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 35469 0.68 0.547635
Target:  5'- --cCGcCAgcACCGC-CCGGUAGGCCGa -3'
miRNA:   3'- cauGCaGU--UGGUGuGGCCGUCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 34062 0.68 0.547635
Target:  5'- --uUGUcCGACCACGgCGGCGGuGuCCACa -3'
miRNA:   3'- cauGCA-GUUGGUGUgGCCGUC-C-GGUG- -5'
23428 5' -56.7 NC_005259.1 + 51018 0.68 0.537112
Target:  5'- cGUugGUCGugcuACCgACGagCGGCGGGCaCGCg -3'
miRNA:   3'- -CAugCAGU----UGG-UGUg-GCCGUCCG-GUG- -5'
23428 5' -56.7 NC_005259.1 + 28276 0.69 0.49579
Target:  5'- --cCGUCGGCUcUGCCGauGUAGGCCACg -3'
miRNA:   3'- cauGCAGUUGGuGUGGC--CGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 9523 0.69 0.485681
Target:  5'- -cGCGUCGACC--GCCGcCGGGUCACc -3'
miRNA:   3'- caUGCAGUUGGugUGGCcGUCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 64204 0.69 0.485681
Target:  5'- -gAUGUCGACCuCGCCGGUcGGCaGCc -3'
miRNA:   3'- caUGCAGUUGGuGUGGCCGuCCGgUG- -5'
23428 5' -56.7 NC_005259.1 + 5402 0.69 0.475671
Target:  5'- cGU-CGUCAucacCCGCGCUGGCc-GCCACg -3'
miRNA:   3'- -CAuGCAGUu---GGUGUGGCCGucCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 58950 0.69 0.475671
Target:  5'- -aGCGUCGGCCuugGCCaGCAGGUCGg -3'
miRNA:   3'- caUGCAGUUGGug-UGGcCGUCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 14180 0.69 0.475671
Target:  5'- -gGCGgguggCAACCGCucacccCCGaGCAGGCCGg -3'
miRNA:   3'- caUGCa----GUUGGUGu-----GGC-CGUCCGGUg -5'
23428 5' -56.7 NC_005259.1 + 38714 0.7 0.465765
Target:  5'- uGUAgGUUGACCACcgcugccgccguACCGGCGGuggcccGCCGCa -3'
miRNA:   3'- -CAUgCAGUUGGUG------------UGGCCGUC------CGGUG- -5'
23428 5' -56.7 NC_005259.1 + 8662 0.7 0.465765
Target:  5'- ---gGUCGggcuGCCACGCgGGCaacgGGGCCGCc -3'
miRNA:   3'- caugCAGU----UGGUGUGgCCG----UCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 19124 0.7 0.455968
Target:  5'- uGUGCGUCGugcACCACACgaGuaAGGCaCACa -3'
miRNA:   3'- -CAUGCAGU---UGGUGUGg-CcgUCCG-GUG- -5'
23428 5' -56.7 NC_005259.1 + 18124 0.7 0.455968
Target:  5'- cUACGagGGCaACAUCGGCaAGGCCAUg -3'
miRNA:   3'- cAUGCagUUGgUGUGGCCG-UCCGGUG- -5'
23428 5' -56.7 NC_005259.1 + 49564 0.7 0.417933
Target:  5'- uGUuCGUCGgucgugGCCAgACCGGCGGGCgGg -3'
miRNA:   3'- -CAuGCAGU------UGGUgUGGCCGUCCGgUg -5'
23428 5' -56.7 NC_005259.1 + 767 0.71 0.408729
Target:  5'- -cGCGUCcACCGCGCCgaGGC-GGCUGCc -3'
miRNA:   3'- caUGCAGuUGGUGUGG--CCGuCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.