miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23429 3' -53.1 NC_005259.1 + 19645 0.69 0.742755
Target:  5'- aCGcUCACCGGCaccGCCUCGGgcAGCcgCu -3'
miRNA:   3'- gGCuAGUGGCCGc--UGGAGUU--UCGuaG- -5'
23429 3' -53.1 NC_005259.1 + 21033 0.72 0.537635
Target:  5'- aCCGAUgACCGGCGcGCgUUCAAGGUcgCc -3'
miRNA:   3'- -GGCUAgUGGCCGC-UG-GAGUUUCGuaG- -5'
23429 3' -53.1 NC_005259.1 + 22526 0.69 0.742755
Target:  5'- aCCG-UCGCCGGUGAUUUCc-AGCAg- -3'
miRNA:   3'- -GGCuAGUGGCCGCUGGAGuuUCGUag -5'
23429 3' -53.1 NC_005259.1 + 26126 0.67 0.839308
Target:  5'- gCCGGUCGCCGGUccgacGCCgcCGAGGCc-- -3'
miRNA:   3'- -GGCUAGUGGCCGc----UGGa-GUUUCGuag -5'
23429 3' -53.1 NC_005259.1 + 26768 0.66 0.894774
Target:  5'- aCCGAUgaugcCGCCGGUG-CCUCGGaacaccAGCGc- -3'
miRNA:   3'- -GGCUA-----GUGGCCGCuGGAGUU------UCGUag -5'
23429 3' -53.1 NC_005259.1 + 27319 0.66 0.880154
Target:  5'- aUCGuugCGCgGGUuGCCUCGguaGAGCAUCc -3'
miRNA:   3'- -GGCua-GUGgCCGcUGGAGU---UUCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 31382 0.66 0.872464
Target:  5'- cCCGuagCAccCCGGUGACaUCGGAGCAc- -3'
miRNA:   3'- -GGCua-GU--GGCCGCUGgAGUUUCGUag -5'
23429 3' -53.1 NC_005259.1 + 31892 0.69 0.753091
Target:  5'- gCCGGUCucaaggcCCGGCGcgagcGCCUCAAucuCGUCa -3'
miRNA:   3'- -GGCUAGu------GGCCGC-----UGGAGUUuc-GUAG- -5'
23429 3' -53.1 NC_005259.1 + 39563 0.74 0.445765
Target:  5'- gCCGGUCGuCCGGCccGACCUCGAuGCu-- -3'
miRNA:   3'- -GGCUAGU-GGCCG--CUGGAGUUuCGuag -5'
23429 3' -53.1 NC_005259.1 + 42763 0.7 0.678813
Target:  5'- cUCGAUCuGCuCGGCGGUCUCGGGGCcgCc -3'
miRNA:   3'- -GGCUAG-UG-GCCGCUGGAGUUUCGuaG- -5'
23429 3' -53.1 NC_005259.1 + 42913 0.7 0.70042
Target:  5'- -aGAUCGuuGGUGGCCUUG-AGCAUg -3'
miRNA:   3'- ggCUAGUggCCGCUGGAGUuUCGUAg -5'
23429 3' -53.1 NC_005259.1 + 43674 0.67 0.855519
Target:  5'- gCCGAUCACaccgccgccggUGGCGAaCCUCuuGaaaccgcgcgaccGCAUCg -3'
miRNA:   3'- -GGCUAGUG-----------GCCGCU-GGAGuuU-------------CGUAG- -5'
23429 3' -53.1 NC_005259.1 + 44798 0.66 0.864527
Target:  5'- aCGcUCGCCGGUGGCCU---GGCccuugGUCa -3'
miRNA:   3'- gGCuAGUGGCCGCUGGAguuUCG-----UAG- -5'
23429 3' -53.1 NC_005259.1 + 44996 0.68 0.783321
Target:  5'- gCCGAggCACCGcCGACCgcCGGGGCcgCg -3'
miRNA:   3'- -GGCUa-GUGGCcGCUGGa-GUUUCGuaG- -5'
23429 3' -53.1 NC_005259.1 + 50406 0.69 0.753091
Target:  5'- gCCGAgcgCGCCGGUG-CCUUGAccGGC-UCg -3'
miRNA:   3'- -GGCUa--GUGGCCGCuGGAGUU--UCGuAG- -5'
23429 3' -53.1 NC_005259.1 + 51993 0.67 0.839308
Target:  5'- aCCGA-CGCCGaucuCGACCggaugCAcGAGCGUCa -3'
miRNA:   3'- -GGCUaGUGGCc---GCUGGa----GU-UUCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 52570 0.7 0.70042
Target:  5'- aUGGUCgACCGGacCGGCCU--GAGCGUCg -3'
miRNA:   3'- gGCUAG-UGGCC--GCUGGAguUUCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 53014 0.79 0.250953
Target:  5'- aCUGGgcgCugCGGUGGCgUCGAGGCAUCg -3'
miRNA:   3'- -GGCUa--GugGCCGCUGgAGUUUCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 56614 0.68 0.767353
Target:  5'- aCGGUaCGCuCGGCGAuugcugcauaguuguUCUCgAAAGCAUCg -3'
miRNA:   3'- gGCUA-GUG-GCCGCU---------------GGAG-UUUCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 57994 0.66 0.894774
Target:  5'- cCCGGUCgaGCCaGCGACCauguuGAGgAUCg -3'
miRNA:   3'- -GGCUAG--UGGcCGCUGGagu--UUCgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.