miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23429 5' -57.8 NC_005259.1 + 60325 0.66 0.651375
Target:  5'- cCGGGCgUguugacGCUCaaGGCGGCGAUCAg -3'
miRNA:   3'- -GUCUGgGagua--CGAG--CCGCCGCUAGU- -5'
23429 5' -57.8 NC_005259.1 + 31680 0.66 0.651375
Target:  5'- gGGuuGCCCgaggCAUcCUCGGCGGUGAcCAc -3'
miRNA:   3'- gUC--UGGGa---GUAcGAGCCGCCGCUaGU- -5'
23429 5' -57.8 NC_005259.1 + 18901 0.66 0.651375
Target:  5'- -cGACCUcggcaacgaucUgAUGCUCGGCGacuCGAUCAu -3'
miRNA:   3'- guCUGGG-----------AgUACGAGCCGCc--GCUAGU- -5'
23429 5' -57.8 NC_005259.1 + 28215 0.66 0.629968
Target:  5'- gUAGACggUCGUGCcgccaccgUCGGCGGCGGg-- -3'
miRNA:   3'- -GUCUGggAGUACG--------AGCCGCCGCUagu -5'
23429 5' -57.8 NC_005259.1 + 65083 0.66 0.619262
Target:  5'- --cACCCUCAgucgaGCUCGGCucguGGCacGGUCAg -3'
miRNA:   3'- gucUGGGAGUa----CGAGCCG----CCG--CUAGU- -5'
23429 5' -57.8 NC_005259.1 + 60405 0.66 0.619262
Target:  5'- gAGGCCCaucUCGaucUGCUCGGgGGUGGc-- -3'
miRNA:   3'- gUCUGGG---AGU---ACGAGCCgCCGCUagu -5'
23429 5' -57.8 NC_005259.1 + 59132 0.66 0.597893
Target:  5'- gCAGAgCgUCGaGCUCGGCaGCGGUg- -3'
miRNA:   3'- -GUCUgGgAGUaCGAGCCGcCGCUAgu -5'
23429 5' -57.8 NC_005259.1 + 13104 0.67 0.555546
Target:  5'- -cGACCCcggCccGCUCGGCGGCu---- -3'
miRNA:   3'- guCUGGGa--GuaCGAGCCGCCGcuagu -5'
23429 5' -57.8 NC_005259.1 + 54985 0.68 0.493872
Target:  5'- gCAG-CaCCUCAucgaucuugUGCUCGGCucgcuuGGCGGUCGu -3'
miRNA:   3'- -GUCuG-GGAGU---------ACGAGCCG------CCGCUAGU- -5'
23429 5' -57.8 NC_005259.1 + 42753 0.69 0.477943
Target:  5'- gCAGGCgguUCUCGaucUGCUCGGCGGUcucggggccgccaccGAUCAc -3'
miRNA:   3'- -GUCUG---GGAGU---ACGAGCCGCCG---------------CUAGU- -5'
23429 5' -57.8 NC_005259.1 + 20040 0.7 0.416964
Target:  5'- aAGACCgUCAagcgcUGCgauguccgcugCGGUGGCGGUCGu -3'
miRNA:   3'- gUCUGGgAGU-----ACGa----------GCCGCCGCUAGU- -5'
23429 5' -57.8 NC_005259.1 + 8763 0.7 0.372766
Target:  5'- gAGGCCCUUGgccaGCgCGGCGGUGAUgAg -3'
miRNA:   3'- gUCUGGGAGUa---CGaGCCGCCGCUAgU- -5'
23429 5' -57.8 NC_005259.1 + 63537 0.71 0.324088
Target:  5'- uGGACCUUUucgagGUGCUCGGCGGCc---- -3'
miRNA:   3'- gUCUGGGAG-----UACGAGCCGCCGcuagu -5'
23429 5' -57.8 NC_005259.1 + 41218 0.72 0.31645
Target:  5'- uGGAUCgUCAcgcccUGCUCGGCGGUGAc-- -3'
miRNA:   3'- gUCUGGgAGU-----ACGAGCCGCCGCUagu -5'
23429 5' -57.8 NC_005259.1 + 58904 0.73 0.266792
Target:  5'- --cACCCUCggGCUCGuCGGCGGUCu -3'
miRNA:   3'- gucUGGGAGuaCGAGCcGCCGCUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.