miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2343 5' -57.8 NC_001416.1 + 1089 0.68 0.385459
Target:  5'- -cGUCGCuGCUGGCGcuGGCCCCgUGGu- -3'
miRNA:   3'- acUAGCG-UGGCCGU--UCGGGGgACUug -5'
2343 5' -57.8 NC_001416.1 + 4321 0.69 0.341501
Target:  5'- cGAUggaGCGCCGuGCAGccggucuuaaaccGCCCgCCUGGGCg -3'
miRNA:   3'- aCUAg--CGUGGC-CGUU-------------CGGG-GGACUUG- -5'
2343 5' -57.8 NC_001416.1 + 6073 0.66 0.5234
Target:  5'- --cUCGuCGCUGGC-AGCCUCCggccaGAGCa -3'
miRNA:   3'- acuAGC-GUGGCCGuUCGGGGGa----CUUG- -5'
2343 5' -57.8 NC_001416.1 + 10007 0.66 0.535106
Target:  5'- gUGGU-GUACCGGCugucugguauguauGAGUuuguggugaauaaugCCCCUGAACa -3'
miRNA:   3'- -ACUAgCGUGGCCG--------------UUCG---------------GGGGACUUG- -5'
2343 5' -57.8 NC_001416.1 + 10601 0.66 0.512844
Target:  5'- aGAUCGCcuACCGGUucAGCCaUCC-GGACu -3'
miRNA:   3'- aCUAGCG--UGGCCGu-UCGG-GGGaCUUG- -5'
2343 5' -57.8 NC_001416.1 + 10934 1.1 0.000352
Target:  5'- gUGAUCGCACCGGCAAGCCCCCUGAACa -3'
miRNA:   3'- -ACUAGCGUGGCCGUUCGGGGGACUUG- -5'
2343 5' -57.8 NC_001416.1 + 15151 0.71 0.253484
Target:  5'- aUGAUCcgGCAauGGCGgcAGCCCCCaGGACa -3'
miRNA:   3'- -ACUAG--CGUggCCGU--UCGGGGGaCUUG- -5'
2343 5' -57.8 NC_001416.1 + 20209 0.66 0.492004
Target:  5'- cUGAUgccgcuucUGCGCCGGaggacGCUUCCUGAGCu -3'
miRNA:   3'- -ACUA--------GCGUGGCCguu--CGGGGGACUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.