miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23430 3' -54.6 NC_005259.1 + 15155 0.66 0.831658
Target:  5'- cUCgGUgGCCGAGGcCGAggccauCCUCGAcaCGCa -3'
miRNA:   3'- aAG-CAgUGGUUCCuGCU------GGAGCU--GCG- -5'
23430 3' -54.6 NC_005259.1 + 57836 0.66 0.831658
Target:  5'- aUCGgCAC---GGAUGACCUCGugGa -3'
miRNA:   3'- aAGCaGUGguuCCUGCUGGAGCugCg -5'
23430 3' -54.6 NC_005259.1 + 42988 0.66 0.830773
Target:  5'- aUCGUUGCCGccccgccgaacaGGGACGAgaacaaaCCggCGAUGCc -3'
miRNA:   3'- aAGCAGUGGU------------UCCUGCU-------GGa-GCUGCG- -5'
23430 3' -54.6 NC_005259.1 + 26277 0.66 0.822716
Target:  5'- -aUGUCGCCGGuGcCGcCCUCGACGg -3'
miRNA:   3'- aaGCAGUGGUUcCuGCuGGAGCUGCg -5'
23430 3' -54.6 NC_005259.1 + 38159 0.66 0.813578
Target:  5'- cUCG-CGCCGAuGACGgugaucgguGCCUCGuCGCu -3'
miRNA:   3'- aAGCaGUGGUUcCUGC---------UGGAGCuGCG- -5'
23430 3' -54.6 NC_005259.1 + 62122 0.66 0.813578
Target:  5'- gUCaGUCACCGAGGugauCG-UCUCGAC-Ca -3'
miRNA:   3'- aAG-CAGUGGUUCCu---GCuGGAGCUGcG- -5'
23430 3' -54.6 NC_005259.1 + 903 0.66 0.813578
Target:  5'- ----aCACCGAGGugGugCcCGGCGa -3'
miRNA:   3'- aagcaGUGGUUCCugCugGaGCUGCg -5'
23430 3' -54.6 NC_005259.1 + 35710 0.66 0.813578
Target:  5'- --gGUCGCUgacGAGGuauccgcccgACGACC-CGGCGCu -3'
miRNA:   3'- aagCAGUGG---UUCC----------UGCUGGaGCUGCG- -5'
23430 3' -54.6 NC_005259.1 + 58087 0.66 0.812654
Target:  5'- cUCGg-GCCAgcccugcucuugcAGGAUGcccGCUUCGACGCa -3'
miRNA:   3'- aAGCagUGGU-------------UCCUGC---UGGAGCUGCG- -5'
23430 3' -54.6 NC_005259.1 + 13577 0.66 0.804256
Target:  5'- -cCGaCAcCCGAGGACGACCccacguUCGAuugcCGCu -3'
miRNA:   3'- aaGCaGU-GGUUCCUGCUGG------AGCU----GCG- -5'
23430 3' -54.6 NC_005259.1 + 39567 0.66 0.804256
Target:  5'- gUCGUCcgGCC-----CGACCUCGAUGCu -3'
miRNA:   3'- aAGCAG--UGGuuccuGCUGGAGCUGCG- -5'
23430 3' -54.6 NC_005259.1 + 16480 0.66 0.804256
Target:  5'- aUCGcCGUCAAGGGCGcACC-CGcGCGCa -3'
miRNA:   3'- aAGCaGUGGUUCCUGC-UGGaGC-UGCG- -5'
23430 3' -54.6 NC_005259.1 + 45818 0.66 0.804256
Target:  5'- -gCGUaGCCGGGGAUGACCaugcCGucCGCa -3'
miRNA:   3'- aaGCAgUGGUUCCUGCUGGa---GCu-GCG- -5'
23430 3' -54.6 NC_005259.1 + 32887 0.67 0.788981
Target:  5'- aUCGauUCACCGGGGGCGagggugagccacccgGCCcgcUCgGGCGCg -3'
miRNA:   3'- aAGC--AGUGGUUCCUGC---------------UGG---AG-CUGCG- -5'
23430 3' -54.6 NC_005259.1 + 13765 0.67 0.785097
Target:  5'- ---cUCGCCGAcGACGugUUCGACGg -3'
miRNA:   3'- aagcAGUGGUUcCUGCugGAGCUGCg -5'
23430 3' -54.6 NC_005259.1 + 55810 0.67 0.785097
Target:  5'- -aCGgcUCACCcucGGGGuaggccgccGCGuCCUCGACGCg -3'
miRNA:   3'- aaGC--AGUGG---UUCC---------UGCuGGAGCUGCG- -5'
23430 3' -54.6 NC_005259.1 + 4108 0.67 0.785097
Target:  5'- -----uGCCAAaccucGGCGGCCUCGACGUg -3'
miRNA:   3'- aagcagUGGUUc----CUGCUGGAGCUGCG- -5'
23430 3' -54.6 NC_005259.1 + 43530 0.67 0.77528
Target:  5'- aUCGUCggucauuuccAUCAAGGugucACGcACCUCGAUGUc -3'
miRNA:   3'- aAGCAG----------UGGUUCC----UGC-UGGAGCUGCG- -5'
23430 3' -54.6 NC_005259.1 + 43185 0.67 0.76532
Target:  5'- gUCGgUACCGaccucGGcGGCGAUgUCGACGCc -3'
miRNA:   3'- aAGCaGUGGU-----UC-CUGCUGgAGCUGCG- -5'
23430 3' -54.6 NC_005259.1 + 53520 0.67 0.76532
Target:  5'- cUCGUgGCCAGcGGcACGGgCUCGGUGCc -3'
miRNA:   3'- aAGCAgUGGUU-CC-UGCUgGAGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.