miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23431 3' -55.8 NC_005259.1 + 29115 0.66 0.769451
Target:  5'- gGACCcugcuggugAGCGCggcgguauucgccucGCUCAccGCGCUcGGCUg -3'
miRNA:   3'- gCUGG---------UUGCG---------------CGAGUuaCGCGA-CCGG- -5'
23431 3' -55.8 NC_005259.1 + 26355 0.66 0.765468
Target:  5'- gGGCCGAgcUGCGCguaGAUGuCGgUGGCg -3'
miRNA:   3'- gCUGGUU--GCGCGag-UUAC-GCgACCGg -5'
23431 3' -55.8 NC_005259.1 + 29042 0.66 0.765468
Target:  5'- uGACCAACGacgagaGCcgCGA-GCGCgguaucGGCCc -3'
miRNA:   3'- gCUGGUUGCg-----CGa-GUUaCGCGa-----CCGG- -5'
23431 3' -55.8 NC_005259.1 + 9821 0.66 0.765468
Target:  5'- cCGcACCGccGgGUGCg----GCGCUGGCCc -3'
miRNA:   3'- -GC-UGGU--UgCGCGaguuaCGCGACCGG- -5'
23431 3' -55.8 NC_005259.1 + 17890 0.66 0.762467
Target:  5'- gGACCcccgcaccGCGCGC-CGAUGCGUguggaugcccggucUGGaCCg -3'
miRNA:   3'- gCUGGu-------UGCGCGaGUUACGCG--------------ACC-GG- -5'
23431 3' -55.8 NC_005259.1 + 2064 0.66 0.755421
Target:  5'- aGACaCGGCG-GUUCAAuUGgGCgGGCCu -3'
miRNA:   3'- gCUG-GUUGCgCGAGUU-ACgCGaCCGG- -5'
23431 3' -55.8 NC_005259.1 + 27208 0.66 0.755421
Target:  5'- cCGcACC-GCGaGCUCGGUGaGCgGGCCg -3'
miRNA:   3'- -GC-UGGuUGCgCGAGUUACgCGaCCGG- -5'
23431 3' -55.8 NC_005259.1 + 24776 0.66 0.745252
Target:  5'- uCGACCAcC-CGC-CGuAUGCGCagcagGGCCa -3'
miRNA:   3'- -GCUGGUuGcGCGaGU-UACGCGa----CCGG- -5'
23431 3' -55.8 NC_005259.1 + 48452 0.66 0.745252
Target:  5'- gCGG-CAGCGCGUUcCAccGCGCgccgGGUCg -3'
miRNA:   3'- -GCUgGUUGCGCGA-GUuaCGCGa---CCGG- -5'
23431 3' -55.8 NC_005259.1 + 6049 0.66 0.745252
Target:  5'- -cACCGACGaGCUCGuGUGCGCggugaucGCCg -3'
miRNA:   3'- gcUGGUUGCgCGAGU-UACGCGac-----CGG- -5'
23431 3' -55.8 NC_005259.1 + 20041 0.66 0.744228
Target:  5'- aGACCGucaaGCGCUgCGAuguccgcUGCGgUGGCg -3'
miRNA:   3'- gCUGGUug--CGCGA-GUU-------ACGCgACCGg -5'
23431 3' -55.8 NC_005259.1 + 43436 0.66 0.744228
Target:  5'- uCGACUGGCuGCGCUCGAUGagacccgagguguCGUUGaGCa -3'
miRNA:   3'- -GCUGGUUG-CGCGAGUUAC-------------GCGAC-CGg -5'
23431 3' -55.8 NC_005259.1 + 13392 0.66 0.734972
Target:  5'- cCGACCcACGCauucGCUCg--GCcuucCUGGCCg -3'
miRNA:   3'- -GCUGGuUGCG----CGAGuuaCGc---GACCGG- -5'
23431 3' -55.8 NC_005259.1 + 44043 0.66 0.721461
Target:  5'- cCGGCCuuGACGaccgGCUCgAGUGCGCugucguugagcuucUGGCUg -3'
miRNA:   3'- -GCUGG--UUGCg---CGAG-UUACGCG--------------ACCGG- -5'
23431 3' -55.8 NC_005259.1 + 40080 0.67 0.707807
Target:  5'- gGGCCGACGCGCaccgagcgcggauucUCGAgucggcgaaUGCGCUcguggaauuGGCg -3'
miRNA:   3'- gCUGGUUGCGCG---------------AGUU---------ACGCGA---------CCGg -5'
23431 3' -55.8 NC_005259.1 + 56103 0.67 0.70358
Target:  5'- gGGCCAcCGCGUggcCAccgaaacuguGUGCGCUG-CCg -3'
miRNA:   3'- gCUGGUuGCGCGa--GU----------UACGCGACcGG- -5'
23431 3' -55.8 NC_005259.1 + 60109 0.67 0.70358
Target:  5'- uCGACCAGCgacucgauaucgGCGgcCUCGuccUGCGC-GGCCu -3'
miRNA:   3'- -GCUGGUUG------------CGC--GAGUu--ACGCGaCCGG- -5'
23431 3' -55.8 NC_005259.1 + 6513 0.67 0.70358
Target:  5'- uCGACCGACGC-C---GUGCGCgcgacaaccGGCCu -3'
miRNA:   3'- -GCUGGUUGCGcGaguUACGCGa--------CCGG- -5'
23431 3' -55.8 NC_005259.1 + 44106 0.67 0.70358
Target:  5'- uCGACCAucugcuCGCGCaUCGccuguagcuGUGCGUUGaGCg -3'
miRNA:   3'- -GCUGGUu-----GCGCG-AGU---------UACGCGAC-CGg -5'
23431 3' -55.8 NC_005259.1 + 60242 0.67 0.70358
Target:  5'- uGGCaCGcuuGCGUGCg-GGUGCaagGCUGGCCa -3'
miRNA:   3'- gCUG-GU---UGCGCGagUUACG---CGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.