miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23432 3' -54.8 NC_005259.1 + 43680 0.67 0.758843
Target:  5'- --cACACCGcCGCcGGUGGCGa-ACCu -3'
miRNA:   3'- gcaUGUGGCaGCGaCUACCGUggUGG- -5'
23432 3' -54.8 NC_005259.1 + 67136 0.67 0.755821
Target:  5'- gCGUgaGCACCGcugugagccgcuugUCGaUGGUGGCggccauGCCGCCg -3'
miRNA:   3'- -GCA--UGUGGC--------------AGCgACUACCG------UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 39583 0.67 0.748728
Target:  5'- uCG-AUGCUGUUGCUGuggaucguguggGUGGUGCCAUCa -3'
miRNA:   3'- -GCaUGUGGCAGCGAC------------UACCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 21595 0.67 0.748728
Target:  5'- gCG-ACACCGccaaGCUGAUcuaCACCACCg -3'
miRNA:   3'- -GCaUGUGGCag--CGACUAcc-GUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 37652 0.67 0.7385
Target:  5'- --cGCACCGcCGCcgccGccGGUGCCGCCa -3'
miRNA:   3'- gcaUGUGGCaGCGa---CuaCCGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 35695 0.67 0.7385
Target:  5'- cCGUGC-CCGgcgaggggUCGCUGAcgaGGUAuCCGCCc -3'
miRNA:   3'- -GCAUGuGGC--------AGCGACUa--CCGU-GGUGG- -5'
23432 3' -54.8 NC_005259.1 + 12221 0.67 0.7385
Target:  5'- --cGCACCGccCGCUGGccgggcaaUGGUcacACCGCCu -3'
miRNA:   3'- gcaUGUGGCa-GCGACU--------ACCG---UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 63584 0.67 0.7385
Target:  5'- -aUACGCCGccUgGCUGuucucguccuccAUGGCGgCCACCg -3'
miRNA:   3'- gcAUGUGGC--AgCGAC------------UACCGU-GGUGG- -5'
23432 3' -54.8 NC_005259.1 + 8478 0.68 0.728168
Target:  5'- aCGaGCACCG-CGCUGucGGCACugauggugugCACCa -3'
miRNA:   3'- -GCaUGUGGCaGCGACuaCCGUG----------GUGG- -5'
23432 3' -54.8 NC_005259.1 + 59504 0.68 0.728168
Target:  5'- aGUGuCACCGcccggcgaaUUGCUGuUGGCcuuagcgccGCCACCa -3'
miRNA:   3'- gCAU-GUGGC---------AGCGACuACCG---------UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 45466 0.68 0.72609
Target:  5'- gGUGCcgaacggGCCGagcuucuggcCGCUGGUGGCcuuggucgcugugGCCACCg -3'
miRNA:   3'- gCAUG-------UGGCa---------GCGACUACCG-------------UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 46884 0.68 0.717745
Target:  5'- --cGCGCCGcCGCccgcGAUGaGCGCCcGCCg -3'
miRNA:   3'- gcaUGUGGCaGCGa---CUAC-CGUGG-UGG- -5'
23432 3' -54.8 NC_005259.1 + 19103 0.68 0.717745
Target:  5'- gCGaacuCACCGgCGCUGGUGugugcgucguGCACCACa -3'
miRNA:   3'- -GCau--GUGGCaGCGACUAC----------CGUGGUGg -5'
23432 3' -54.8 NC_005259.1 + 51024 0.68 0.686029
Target:  5'- uCGUGCuACCGacgaGCgGcgGGCACgCGCCa -3'
miRNA:   3'- -GCAUG-UGGCag--CGaCuaCCGUG-GUGG- -5'
23432 3' -54.8 NC_005259.1 + 42812 0.68 0.686029
Target:  5'- gCGUGCACUGUgGUauUGcUGcCGCCGCCg -3'
miRNA:   3'- -GCAUGUGGCAgCG--ACuACcGUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 11130 0.68 0.686029
Target:  5'- gGUGCgaGCCGUCGcCUGcgGGUAaCACUu -3'
miRNA:   3'- gCAUG--UGGCAGC-GACuaCCGUgGUGG- -5'
23432 3' -54.8 NC_005259.1 + 9507 0.68 0.676415
Target:  5'- aCGUGCGCuCGUCGCgcgcgucgacCGCCGCCg -3'
miRNA:   3'- -GCAUGUG-GCAGCGacuacc----GUGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 20133 0.68 0.674273
Target:  5'- uGgcUGCCGUCGCgaUGAcGGCagccggugcccugGCCACCg -3'
miRNA:   3'- gCauGUGGCAGCG--ACUaCCG-------------UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 37224 0.69 0.66462
Target:  5'- ---cCGCCGgggCGCUGGcccgugccggauUGGCuGCCGCCg -3'
miRNA:   3'- gcauGUGGCa--GCGACU------------ACCG-UGGUGG- -5'
23432 3' -54.8 NC_005259.1 + 4509 0.69 0.66462
Target:  5'- --cGCGCCGggaguggCGCUGcgcGGCACC-CCg -3'
miRNA:   3'- gcaUGUGGCa------GCGACua-CCGUGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.