miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23433 5' -57 NC_005259.1 + 14707 0.66 0.680956
Target:  5'- -cGCCGCGACGAacagcacgcCGcGCUCGUCGc--- -3'
miRNA:   3'- gaUGGCGCUGCU---------GC-CGAGCGGUcaaa -5'
23433 5' -57 NC_005259.1 + 27915 0.66 0.66063
Target:  5'- -gACCGCGcgggugguagcgguuCGGCGacccaGCUCGCCGGUg- -3'
miRNA:   3'- gaUGGCGCu--------------GCUGC-----CGAGCGGUCAaa -5'
23433 5' -57 NC_005259.1 + 64896 0.66 0.659558
Target:  5'- -aGCCGCGugacacgaGCGACGGCgagCGUgAGg-- -3'
miRNA:   3'- gaUGGCGC--------UGCUGCCGa--GCGgUCaaa -5'
23433 5' -57 NC_005259.1 + 64756 0.66 0.659558
Target:  5'- -cACCGCGccucGCGACGGUgCGCCu---- -3'
miRNA:   3'- gaUGGCGC----UGCUGCCGaGCGGucaaa -5'
23433 5' -57 NC_005259.1 + 34713 0.66 0.648817
Target:  5'- uCUGCCGCG-CGAgCGcCUCGUCGGg-- -3'
miRNA:   3'- -GAUGGCGCuGCU-GCcGAGCGGUCaaa -5'
23433 5' -57 NC_005259.1 + 7213 0.66 0.645591
Target:  5'- gCUGCgGUGgaucugcgugaugaACGACGGCagccgCGCCGGUg- -3'
miRNA:   3'- -GAUGgCGC--------------UGCUGCCGa----GCGGUCAaa -5'
23433 5' -57 NC_005259.1 + 57531 0.67 0.627301
Target:  5'- uUGCCGaCGGCGAUGGCgUCcUCGGUg- -3'
miRNA:   3'- gAUGGC-GCUGCUGCCG-AGcGGUCAaa -5'
23433 5' -57 NC_005259.1 + 45535 0.67 0.605801
Target:  5'- -cGCCGUGGCuGCGagcggguuGCUCGCCGGg-- -3'
miRNA:   3'- gaUGGCGCUGcUGC--------CGAGCGGUCaaa -5'
23433 5' -57 NC_005259.1 + 66269 0.67 0.59508
Target:  5'- -cGCCG-GGCGGCGGCUcaCGCCGc--- -3'
miRNA:   3'- gaUGGCgCUGCUGCCGA--GCGGUcaaa -5'
23433 5' -57 NC_005259.1 + 18835 0.68 0.542078
Target:  5'- uCUGCC-CGGUGAgGGuCUCGCCGGUg- -3'
miRNA:   3'- -GAUGGcGCUGCUgCC-GAGCGGUCAaa -5'
23433 5' -57 NC_005259.1 + 35648 0.68 0.521296
Target:  5'- gCUGCCGCuGGCGAgGGUg-GCCAGc-- -3'
miRNA:   3'- -GAUGGCG-CUGCUgCCGagCGGUCaaa -5'
23433 5' -57 NC_005259.1 + 57453 0.69 0.500832
Target:  5'- uUGgUGCGACGcuGCGGCagGCCGGUg- -3'
miRNA:   3'- gAUgGCGCUGC--UGCCGagCGGUCAaa -5'
23433 5' -57 NC_005259.1 + 2158 0.69 0.500832
Target:  5'- -gGCCaGCGGCGuCGaGC-CGCCGGUUg -3'
miRNA:   3'- gaUGG-CGCUGCuGC-CGaGCGGUCAAa -5'
23433 5' -57 NC_005259.1 + 58579 0.69 0.48073
Target:  5'- -gAUCGCGGCG-CGGCU-GCCGGg-- -3'
miRNA:   3'- gaUGGCGCUGCuGCCGAgCGGUCaaa -5'
23433 5' -57 NC_005259.1 + 9153 0.69 0.470827
Target:  5'- gUGCC-CGuCGACGGCaUGCCGGUg- -3'
miRNA:   3'- gAUGGcGCuGCUGCCGaGCGGUCAaa -5'
23433 5' -57 NC_005259.1 + 8988 0.7 0.42296
Target:  5'- gUGCCaGCGGCGACGGCagcCGCCu---- -3'
miRNA:   3'- gAUGG-CGCUGCUGCCGa--GCGGucaaa -5'
23433 5' -57 NC_005259.1 + 23654 0.72 0.344645
Target:  5'- -cGCCGaCGGCGACGGCUggacCGCCGa--- -3'
miRNA:   3'- gaUGGC-GCUGCUGCCGA----GCGGUcaaa -5'
23433 5' -57 NC_005259.1 + 19957 0.73 0.305859
Target:  5'- --uCCGCaACGGCGGCUCGgCGGUg- -3'
miRNA:   3'- gauGGCGcUGCUGCCGAGCgGUCAaa -5'
23433 5' -57 NC_005259.1 + 58195 0.73 0.298515
Target:  5'- -gACCGC--CGugGGCUUGCCGGUg- -3'
miRNA:   3'- gaUGGCGcuGCugCCGAGCGGUCAaa -5'
23433 5' -57 NC_005259.1 + 20135 0.75 0.226638
Target:  5'- gCUGCCgucGCGAUGACGGCa-GCCGGUg- -3'
miRNA:   3'- -GAUGG---CGCUGCUGCCGagCGGUCAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.