miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23434 3' -51.3 NC_005259.1 + 10913 0.66 0.94269
Target:  5'- cGAUG-CUggCUgCGACaaGCUCGGCGa -3'
miRNA:   3'- -CUACuGAaaGA-GCUGgaCGAGCUGCa -5'
23434 3' -51.3 NC_005259.1 + 63538 0.67 0.914311
Target:  5'- --gGACcUUUUCGAggUGCUCGGCGg -3'
miRNA:   3'- cuaCUGaAAGAGCUggACGAGCUGCa -5'
23434 3' -51.3 NC_005259.1 + 16667 0.67 0.900982
Target:  5'- gGGUGACcgcCUCGAUgUGgUCGGCGa -3'
miRNA:   3'- -CUACUGaaaGAGCUGgACgAGCUGCa -5'
23434 3' -51.3 NC_005259.1 + 10433 0.67 0.893901
Target:  5'- --cGGCgagCUCGACaucgagugGCUCGACGg -3'
miRNA:   3'- cuaCUGaaaGAGCUGga------CGAGCUGCa -5'
23434 3' -51.3 NC_005259.1 + 39974 0.67 0.893901
Target:  5'- --cGACUg-CUCGACCacCUCGACGg -3'
miRNA:   3'- cuaCUGAaaGAGCUGGacGAGCUGCa -5'
23434 3' -51.3 NC_005259.1 + 58800 0.68 0.871048
Target:  5'- cGGUGAUUgcCUCGGCgggcucgcgCUGCUCGGCa- -3'
miRNA:   3'- -CUACUGAaaGAGCUG---------GACGAGCUGca -5'
23434 3' -51.3 NC_005259.1 + 41198 0.68 0.857913
Target:  5'- uGGUGAUgccgUUgUCGGuguggaucgucacgcCCUGCUCGGCGg -3'
miRNA:   3'- -CUACUGa---AAgAGCU---------------GGACGAGCUGCa -5'
23434 3' -51.3 NC_005259.1 + 46666 0.69 0.809211
Target:  5'- -uUGAggUUCUCGGCgaGCUCGGCc- -3'
miRNA:   3'- cuACUgaAAGAGCUGgaCGAGCUGca -5'
23434 3' -51.3 NC_005259.1 + 60406 0.71 0.727403
Target:  5'- --aGGCccaUCUCGAUCUGCUCGGgGg -3'
miRNA:   3'- cuaCUGaa-AGAGCUGGACGAGCUgCa -5'
23434 3' -51.3 NC_005259.1 + 60089 0.71 0.694786
Target:  5'- --cGACUUUCUCGaugGCgaGCUCGACc- -3'
miRNA:   3'- cuaCUGAAAGAGC---UGgaCGAGCUGca -5'
23434 3' -51.3 NC_005259.1 + 49652 0.71 0.683774
Target:  5'- cGAUGGCggcCUCGauacgcGCCUGCUCGGCc- -3'
miRNA:   3'- -CUACUGaaaGAGC------UGGACGAGCUGca -5'
23434 3' -51.3 NC_005259.1 + 8783 0.75 0.486771
Target:  5'- cGGUGAUgagCUCGGCCcGCUUGGCGa -3'
miRNA:   3'- -CUACUGaaaGAGCUGGaCGAGCUGCa -5'
23434 3' -51.3 NC_005259.1 + 42755 0.83 0.170274
Target:  5'- --aGGCggUUCUCGAUCUGCUCGGCGg -3'
miRNA:   3'- cuaCUGa-AAGAGCUGGACGAGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.