miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23434 5' -55.1 NC_005259.1 + 60275 0.66 0.805818
Target:  5'- cCAGCGcugccgggcGGCC-AUCGuCGUCGGuGCGGCc -3'
miRNA:   3'- -GUUGCa--------CCGGcUAGU-GUAGCC-CGUCG- -5'
23434 5' -55.1 NC_005259.1 + 65103 0.66 0.805818
Target:  5'- --uCGUGGCaCGGUCAgugcgucacCGUCGGcGCAccgGCg -3'
miRNA:   3'- guuGCACCG-GCUAGU---------GUAGCC-CGU---CG- -5'
23434 5' -55.1 NC_005259.1 + 11418 0.66 0.805818
Target:  5'- --uCGUGGCCGGU-GCAacggggaugcUUGGGCcGCu -3'
miRNA:   3'- guuGCACCGGCUAgUGU----------AGCCCGuCG- -5'
23434 5' -55.1 NC_005259.1 + 36437 0.66 0.796356
Target:  5'- gCAGCGUcGCCGAggucgacCGCGUCgaGGGUgAGCa -3'
miRNA:   3'- -GUUGCAcCGGCUa------GUGUAG--CCCG-UCG- -5'
23434 5' -55.1 NC_005259.1 + 61911 0.66 0.786727
Target:  5'- ---gGUcGCCGGUCGuCGUCG-GCAGCu -3'
miRNA:   3'- guugCAcCGGCUAGU-GUAGCcCGUCG- -5'
23434 5' -55.1 NC_005259.1 + 8331 0.66 0.776943
Target:  5'- cCGACGgcgaucaGCCGGUCACGcugcugccgguaUCGcucGGCGGCg -3'
miRNA:   3'- -GUUGCac-----CGGCUAGUGU------------AGC---CCGUCG- -5'
23434 5' -55.1 NC_005259.1 + 67237 0.66 0.767013
Target:  5'- aCGGCGguguaggGGuuGAgcgggGCcUCGGGCAGCc -3'
miRNA:   3'- -GUUGCa------CCggCUag---UGuAGCCCGUCG- -5'
23434 5' -55.1 NC_005259.1 + 10748 0.66 0.756949
Target:  5'- -cGCGcugccGGgCGAUCAUcauGUCGGGCGGg -3'
miRNA:   3'- guUGCa----CCgGCUAGUG---UAGCCCGUCg -5'
23434 5' -55.1 NC_005259.1 + 58335 0.66 0.756949
Target:  5'- gCAGCGagaucaGGUCGGUgGCcUCGGGCAcgucGCa -3'
miRNA:   3'- -GUUGCa-----CCGGCUAgUGuAGCCCGU----CG- -5'
23434 5' -55.1 NC_005259.1 + 51118 0.66 0.756949
Target:  5'- cCGGCa-GGCCaucaGAUCAcCGUCgGGGCGGCc -3'
miRNA:   3'- -GUUGcaCCGG----CUAGU-GUAG-CCCGUCG- -5'
23434 5' -55.1 NC_005259.1 + 67059 0.66 0.756949
Target:  5'- --cCGUGcGCCGAUCuCAa-GGGcCAGCg -3'
miRNA:   3'- guuGCAC-CGGCUAGuGUagCCC-GUCG- -5'
23434 5' -55.1 NC_005259.1 + 34159 0.66 0.756949
Target:  5'- uCGugGUGccccaccaguGCCGGaaCACAcCGGGCAGUg -3'
miRNA:   3'- -GUugCAC----------CGGCUa-GUGUaGCCCGUCG- -5'
23434 5' -55.1 NC_005259.1 + 47074 0.66 0.756949
Target:  5'- aGGCGaGcGCCGAg-ACGaUGGGCAGCa -3'
miRNA:   3'- gUUGCaC-CGGCUagUGUaGCCCGUCG- -5'
23434 5' -55.1 NC_005259.1 + 7873 0.67 0.746761
Target:  5'- ---gGUGGcCCGAgUGCuuggacUCGGGCAGCc -3'
miRNA:   3'- guugCACC-GGCUaGUGu-----AGCCCGUCG- -5'
23434 5' -55.1 NC_005259.1 + 17836 0.67 0.746761
Target:  5'- uCGACGggugGGCCGAggcCACccCGuGGuCAGCg -3'
miRNA:   3'- -GUUGCa---CCGGCUa--GUGuaGC-CC-GUCG- -5'
23434 5' -55.1 NC_005259.1 + 15389 0.67 0.736461
Target:  5'- gCAAcCGUGGCCGcgCAC-UCccaaGGguGCg -3'
miRNA:   3'- -GUU-GCACCGGCuaGUGuAGc---CCguCG- -5'
23434 5' -55.1 NC_005259.1 + 65185 0.67 0.736461
Target:  5'- aGGCGcUGGUCGAUCAgAUCcGGUGGg -3'
miRNA:   3'- gUUGC-ACCGGCUAGUgUAGcCCGUCg -5'
23434 5' -55.1 NC_005259.1 + 62155 0.67 0.736461
Target:  5'- -----aGGCCGcagCACcUCGGGguGCg -3'
miRNA:   3'- guugcaCCGGCua-GUGuAGCCCguCG- -5'
23434 5' -55.1 NC_005259.1 + 47152 0.67 0.735425
Target:  5'- aCAACGUGcGCagcaGAUCACcguagcggcgaagGUCGGcGguGCc -3'
miRNA:   3'- -GUUGCAC-CGg---CUAGUG-------------UAGCC-CguCG- -5'
23434 5' -55.1 NC_005259.1 + 67981 0.67 0.729189
Target:  5'- gCGGCGUGGCCaccgccgcgaGCGUCGacuugcccuccugcGGCGGCa -3'
miRNA:   3'- -GUUGCACCGGcuag------UGUAGC--------------CCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.