Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23435 | 3' | -53.7 | NC_005259.1 | + | 493 | 0.66 | 0.836433 |
Target: 5'- cCGACGCC-ACGcUGCUCGACG-GCa-- -3' miRNA: 3'- -GUUGUGGcUGC-ACGAGUUGCgCGacu -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 640 | 0.69 | 0.664102 |
Target: 5'- aCAACGCCaccgccgagGACGUGCUCGAgGgcaUGCUGu -3' miRNA: 3'- -GUUGUGG---------CUGCACGAGUUgC---GCGACu -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 5192 | 0.69 | 0.664102 |
Target: 5'- cCGACGCCGcCGccaaGCUCAcCGCGCUc- -3' miRNA: 3'- -GUUGUGGCuGCa---CGAGUuGCGCGAcu -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 6045 | 0.82 | 0.137707 |
Target: 5'- gCGACACCGACGaGCUCGuguGCGCGgUGAu -3' miRNA: 3'- -GUUGUGGCUGCaCGAGU---UGCGCgACU- -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 8070 | 0.67 | 0.809042 |
Target: 5'- cCGACAUCGAgauCGUGC----CGCGCUGGc -3' miRNA: 3'- -GUUGUGGCU---GCACGaguuGCGCGACU- -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 9896 | 0.67 | 0.81837 |
Target: 5'- -cGCGCgCGACGaGCUUucggcccuCGCGCUGGu -3' miRNA: 3'- guUGUG-GCUGCaCGAGuu------GCGCGACU- -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 12986 | 0.66 | 0.861909 |
Target: 5'- --cCACCGugGUGCUC-GCGUucGCa-- -3' miRNA: 3'- guuGUGGCugCACGAGuUGCG--CGacu -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 13463 | 0.72 | 0.53372 |
Target: 5'- gCGGCGCUG--GUGCUCAcCGCGCUGc -3' miRNA: 3'- -GUUGUGGCugCACGAGUuGCGCGACu -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 14850 | 0.72 | 0.491982 |
Target: 5'- gGACACgGuCGUGCUCGcgagguuCGCGCUGc -3' miRNA: 3'- gUUGUGgCuGCACGAGUu------GCGCGACu -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 17732 | 0.77 | 0.26134 |
Target: 5'- -cGCACCGugGcUGCUCGACGCGauccgUGAg -3' miRNA: 3'- guUGUGGCugC-ACGAGUUGCGCg----ACU- -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 19302 | 0.68 | 0.749584 |
Target: 5'- gAACGCCGAgGcaCUCGAggaagccauCGCGCUGAu -3' miRNA: 3'- gUUGUGGCUgCacGAGUU---------GCGCGACU- -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 24576 | 0.8 | 0.190914 |
Target: 5'- gGGCACCGcACGUGCUCAACGCuaccggugacgGUUGGg -3' miRNA: 3'- gUUGUGGC-UGCACGAGUUGCG-----------CGACU- -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 28133 | 0.66 | 0.836433 |
Target: 5'- ---uGCCGACGUaggcgaugagcuGCccggccUCGACGCGCUGc -3' miRNA: 3'- guugUGGCUGCA------------CG------AGUUGCGCGACu -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 32256 | 0.68 | 0.749584 |
Target: 5'- cCAACA-CGACGUGCaUCGAUGgGCa-- -3' miRNA: 3'- -GUUGUgGCUGCACG-AGUUGCgCGacu -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 34029 | 0.67 | 0.779997 |
Target: 5'- --uCGgCGGCGUGCgUCGGCGCGUUc- -3' miRNA: 3'- guuGUgGCUGCACG-AGUUGCGCGAcu -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 37085 | 0.67 | 0.769997 |
Target: 5'- -cGCACCGGCGgugGUguaGACGCGUgUGAu -3' miRNA: 3'- guUGUGGCUGCa--CGag-UUGCGCG-ACU- -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 37737 | 0.68 | 0.727643 |
Target: 5'- --cCGCCGACGagcUGCUCGaugaccaGCGCGgUGGc -3' miRNA: 3'- guuGUGGCUGC---ACGAGU-------UGCGCgACU- -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 44038 | 0.69 | 0.661917 |
Target: 5'- gAACACCGGCcuugacgaccgGCUCGAgUGCGCUGu -3' miRNA: 3'- gUUGUGGCUGca---------CGAGUU-GCGCGACu -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 44908 | 0.68 | 0.718106 |
Target: 5'- -cGCGCUGugGgccGCcgCAuACGCGCUGAu -3' miRNA: 3'- guUGUGGCugCa--CGa-GU-UGCGCGACU- -5' |
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23435 | 3' | -53.7 | NC_005259.1 | + | 50682 | 0.69 | 0.69668 |
Target: 5'- uCggUGCCGACGaggcgcUGCUCGucguCGCGCUuGAg -3' miRNA: 3'- -GuuGUGGCUGC------ACGAGUu---GCGCGA-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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