miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23436 3' -65.8 NC_005259.1 + 58969 0.7 0.158487
Target:  5'- aGGuCGGGCaGCuCGUCGGcgACGGCGaGCu -3'
miRNA:   3'- gCC-GCCCGgUG-GCGGCCa-UGCCGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 58918 0.68 0.239709
Target:  5'- uCGGCGGucuuGUCGuCgGCgGGcGCGGUGGCa -3'
miRNA:   3'- -GCCGCC----CGGU-GgCGgCCaUGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 58775 0.68 0.217913
Target:  5'- -uGCGGGCgCugUgcGCCGGUcgaGGCGGUg -3'
miRNA:   3'- gcCGCCCG-GugG--CGGCCAug-CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 56258 0.67 0.263295
Target:  5'- uCGGCGGccuugagcGCCGCCGCCcGGccCGuauCGGCa -3'
miRNA:   3'- -GCCGCC--------CGGUGGCGG-CCauGCc--GCCG- -5'
23436 3' -65.8 NC_005259.1 + 55029 0.69 0.183401
Target:  5'- uCGGCacGGGCUGCCGa-GGUGCuugccucGGUGGCa -3'
miRNA:   3'- -GCCG--CCCGGUGGCggCCAUG-------CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 54704 0.67 0.288733
Target:  5'- aGGCGGGUgGCCucaGCCuGGUACaGGacauagccgaGGCu -3'
miRNA:   3'- gCCGCCCGgUGG---CGG-CCAUG-CCg---------CCG- -5'
23436 3' -65.8 NC_005259.1 + 54493 0.68 0.223198
Target:  5'- ---aGGGUCAUCGgCGGgcAUGGCGGCg -3'
miRNA:   3'- gccgCCCGGUGGCgGCCa-UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 54158 0.68 0.217913
Target:  5'- cCGGCgauGGGCaUACCGCaacuguugaucuUGGUggcccucagGCGGCGGCc -3'
miRNA:   3'- -GCCG---CCCG-GUGGCG------------GCCA---------UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 53530 0.66 0.295387
Target:  5'- gCGGCacGGGCuCGgUGcCCGGUGuCGGCucgGGCg -3'
miRNA:   3'- -GCCG--CCCG-GUgGC-GGCCAU-GCCG---CCG- -5'
23436 3' -65.8 NC_005259.1 + 51824 0.66 0.295387
Target:  5'- gGGCGGGCagacCCGcCCGGUugauCGGCc-- -3'
miRNA:   3'- gCCGCCCGgu--GGC-GGCCAu---GCCGccg -5'
23436 3' -65.8 NC_005259.1 + 51118 0.7 0.179388
Target:  5'- cCGGCaGGCCaucagaucACCGUCGG---GGCGGCc -3'
miRNA:   3'- -GCCGcCCGG--------UGGCGGCCaugCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 50256 0.68 0.228591
Target:  5'- uGGCcaacGGGCUACuCGCUGucguCGGUGGCg -3'
miRNA:   3'- gCCG----CCCGGUG-GCGGCcau-GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 49633 0.74 0.085888
Target:  5'- uCGGCGGcaGCCGC-GUCGGcgAUGGCGGCc -3'
miRNA:   3'- -GCCGCC--CGGUGgCGGCCa-UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 48059 0.66 0.30905
Target:  5'- aCGGCGGGUagCGCCGCCGcGcccugaGCGaUGGUg -3'
miRNA:   3'- -GCCGCCCG--GUGGCGGC-Ca-----UGCcGCCG- -5'
23436 3' -65.8 NC_005259.1 + 47824 0.71 0.136326
Target:  5'- -cGCGGGCCACCGCUGccgcugACGGUGcgaGCu -3'
miRNA:   3'- gcCGCCCGGUGGCGGCca----UGCCGC---CG- -5'
23436 3' -65.8 NC_005259.1 + 47674 0.67 0.27578
Target:  5'- uGGCcuuGGCCACCuuuugcauGcCCGGUugGaugcGCGGCa -3'
miRNA:   3'- gCCGc--CCGGUGG--------C-GGCCAugC----CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 46684 0.66 0.295387
Target:  5'- uCGGCcuGaGCCGCCGCCGcGUcccucgACGcGCGuGCa -3'
miRNA:   3'- -GCCGc-C-CGGUGGCGGC-CA------UGC-CGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 45907 0.71 0.143378
Target:  5'- uCGGCGGG-CACCGCUGGUAgacCGa-GGCu -3'
miRNA:   3'- -GCCGCCCgGUGGCGGCCAU---GCcgCCG- -5'
23436 3' -65.8 NC_005259.1 + 45632 0.66 0.295387
Target:  5'- gGGcCGGGCaGCgCGCCGGUGCcGCcGUg -3'
miRNA:   3'- gCC-GCCCGgUG-GCGGCCAUGcCGcCG- -5'
23436 3' -65.8 NC_005259.1 + 45524 0.68 0.228591
Target:  5'- cCGGUGuuGGCCGCCGUgGcUGCGaGCGGg -3'
miRNA:   3'- -GCCGC--CCGGUGGCGgCcAUGC-CGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.