miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23436 3' -65.8 NC_005259.1 + 35982 0.66 0.323191
Target:  5'- aCGGCGGGaaACCgacggcgagGCCGGacUGCaccgaGGUGGCc -3'
miRNA:   3'- -GCCGCCCggUGG---------CGGCC--AUG-----CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 37045 0.74 0.083682
Target:  5'- uGGUGcccGCCACCGCCc--ACGGCGGCg -3'
miRNA:   3'- gCCGCc--CGGUGGCGGccaUGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 37467 0.69 0.202206
Target:  5'- uGGCuGGCCacGCCGCCGuUGgcugacccaccccCGGCGGUg -3'
miRNA:   3'- gCCGcCCGG--UGGCGGCcAU-------------GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 37534 0.7 0.162484
Target:  5'- uCGuCGGGCCGCCGuuGuUGCGuGUGGUg -3'
miRNA:   3'- -GCcGCCCGGUGGCggCcAUGC-CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 40134 0.73 0.097775
Target:  5'- uGGCGGGCgagcuCGCCGUCGGUuguCGGUgcccgccccGGCa -3'
miRNA:   3'- gCCGCCCG-----GUGGCGGCCAu--GCCG---------CCG- -5'
23436 3' -65.8 NC_005259.1 + 40457 0.67 0.263295
Target:  5'- cCGGUGuGGUugacgUACUGCCGGgcCGcGCGGUu -3'
miRNA:   3'- -GCCGC-CCG-----GUGGCGGCCauGC-CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 41682 0.68 0.214794
Target:  5'- gCGuGCGuGGCCACCGCgcacacaGGcaugcagccgccgcaUAcCGGCGGCg -3'
miRNA:   3'- -GC-CGC-CCGGUGGCGg------CC---------------AU-GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 42473 0.68 0.230779
Target:  5'- aCGGCGaGGCC-CgGCCcGUAgagccgugacccgucCGGCGGUg -3'
miRNA:   3'- -GCCGC-CCGGuGgCGGcCAU---------------GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 43961 0.77 0.05214
Target:  5'- gGGCgGGGCCGCCGCCuGaccgAgGGCGGUg -3'
miRNA:   3'- gCCG-CCCGGUGGCGGcCa---UgCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 45308 0.67 0.262683
Target:  5'- cCGGUGacgccgaGGCCGCCGCCGaacUGC-GUGGCc -3'
miRNA:   3'- -GCCGC-------CCGGUGGCGGCc--AUGcCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 45524 0.68 0.228591
Target:  5'- cCGGUGuuGGCCGCCGUgGcUGCGaGCGGg -3'
miRNA:   3'- -GCCGC--CCGGUGGCGgCcAUGC-CGCCg -5'
23436 3' -65.8 NC_005259.1 + 45632 0.66 0.295387
Target:  5'- gGGcCGGGCaGCgCGCCGGUGCcGCcGUg -3'
miRNA:   3'- gCC-GCCCGgUG-GCGGCCAUGcCGcCG- -5'
23436 3' -65.8 NC_005259.1 + 45907 0.71 0.143378
Target:  5'- uCGGCGGG-CACCGCUGGUAgacCGa-GGCu -3'
miRNA:   3'- -GCCGCCCgGUGGCGGCCAU---GCcgCCG- -5'
23436 3' -65.8 NC_005259.1 + 46684 0.66 0.295387
Target:  5'- uCGGCcuGaGCCGCCGCCGcGUcccucgACGcGCGuGCa -3'
miRNA:   3'- -GCCGc-C-CGGUGGCGGC-CA------UGC-CGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 47674 0.67 0.27578
Target:  5'- uGGCcuuGGCCACCuuuugcauGcCCGGUugGaugcGCGGCa -3'
miRNA:   3'- gCCGc--CCGGUGG--------C-GGCCAugC----CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 47824 0.71 0.136326
Target:  5'- -cGCGGGCCACCGCUGccgcugACGGUGcgaGCu -3'
miRNA:   3'- gcCGCCCGGUGGCGGCca----UGCCGC---CG- -5'
23436 3' -65.8 NC_005259.1 + 48059 0.66 0.30905
Target:  5'- aCGGCGGGUagCGCCGCCGcGcccugaGCGaUGGUg -3'
miRNA:   3'- -GCCGCCCG--GUGGCGGC-Ca-----UGCcGCCG- -5'
23436 3' -65.8 NC_005259.1 + 49633 0.74 0.085888
Target:  5'- uCGGCGGcaGCCGC-GUCGGcgAUGGCGGCc -3'
miRNA:   3'- -GCCGCC--CGGUGgCGGCCa-UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 50256 0.68 0.228591
Target:  5'- uGGCcaacGGGCUACuCGCUGucguCGGUGGCg -3'
miRNA:   3'- gCCG----CCCGGUG-GCGGCcau-GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 51118 0.7 0.179388
Target:  5'- cCGGCaGGCCaucagaucACCGUCGG---GGCGGCc -3'
miRNA:   3'- -GCCGcCCGG--------UGGCGGCCaugCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.