miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23436 3' -65.8 NC_005259.1 + 2228 0.66 0.292711
Target:  5'- cCGGCcucgccauuugucGGCgACaGCCGGUACGGCGa- -3'
miRNA:   3'- -GCCGc------------CCGgUGgCGGCCAUGCCGCcg -5'
23436 3' -65.8 NC_005259.1 + 67711 0.67 0.288733
Target:  5'- uCGGCGGGCauacCCGucagccucgauCCGaUAcCGGCGGCc -3'
miRNA:   3'- -GCCGCCCGgu--GGC-----------GGCcAU-GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 24339 0.67 0.288733
Target:  5'- aCGcGCuGGCCuACCGCCGGgugcucGCacaccgaggucuGGUGGCg -3'
miRNA:   3'- -GC-CGcCCGG-UGGCGGCCa-----UG------------CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 54704 0.67 0.288733
Target:  5'- aGGCGGGUgGCCucaGCCuGGUACaGGacauagccgaGGCu -3'
miRNA:   3'- gCCGCCCGgUGG---CGG-CCAUG-CCg---------CCG- -5'
23436 3' -65.8 NC_005259.1 + 64780 0.67 0.28676
Target:  5'- uCGGCGGcCCGCUgcgacuggcuguguGCCucGGccuCGGCGGCa -3'
miRNA:   3'- -GCCGCCcGGUGG--------------CGG--CCau-GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 40134 0.73 0.097775
Target:  5'- uGGCGGGCgagcuCGCCGUCGGUuguCGGUgcccgccccGGCa -3'
miRNA:   3'- gCCGCCCG-----GUGGCGGCCAu--GCCG---------CCG- -5'
23436 3' -65.8 NC_005259.1 + 45907 0.71 0.143378
Target:  5'- uCGGCGGG-CACCGCUGGUAgacCGa-GGCu -3'
miRNA:   3'- -GCCGCCCgGUGGCGGCCAU---GCcgCCG- -5'
23436 3' -65.8 NC_005259.1 + 47824 0.71 0.136326
Target:  5'- -cGCGGGCCACCGCUGccgcugACGGUGcgaGCu -3'
miRNA:   3'- gcCGCCCGGUGGCGGCca----UGCCGC---CG- -5'
23436 3' -65.8 NC_005259.1 + 35635 0.71 0.136326
Target:  5'- --uCGGGCCGCCGCCGcUGCcGCuGGCg -3'
miRNA:   3'- gccGCCCGGUGGCGGCcAUGcCG-CCG- -5'
23436 3' -65.8 NC_005259.1 + 4482 0.71 0.134274
Target:  5'- uCGGCGGuggaccauggugaucGCCACCgcGCCGGgagugGCGcugcGCGGCa -3'
miRNA:   3'- -GCCGCC---------------CGGUGG--CGGCCa----UGC----CGCCG- -5'
23436 3' -65.8 NC_005259.1 + 13086 0.71 0.132922
Target:  5'- cCGGCcauccGGuGCCACCGaccCCGGcccgcuCGGCGGCu -3'
miRNA:   3'- -GCCG-----CC-CGGUGGC---GGCCau----GCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 62719 0.72 0.129595
Target:  5'- aGGCGGGggaucUCGCuCGaCCGGacCGGCGGCa -3'
miRNA:   3'- gCCGCCC-----GGUG-GC-GGCCauGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 60145 0.72 0.126346
Target:  5'- gCGGCcuuGGCCGCCGCCucagcGGccucACgGGCGGCg -3'
miRNA:   3'- -GCCGc--CCGGUGGCGG-----CCa---UG-CCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 25906 0.72 0.123172
Target:  5'- aGGauGGCCgccugagccgccGCCGCCGGUcCGGUGaGCg -3'
miRNA:   3'- gCCgcCCGG------------UGGCGGCCAuGCCGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 29947 0.72 0.111205
Target:  5'- gCGGCccGGUCGCgGCUGGUGgGGCGGg -3'
miRNA:   3'- -GCCGc-CCGGUGgCGGCCAUgCCGCCg -5'
23436 3' -65.8 NC_005259.1 + 60286 0.73 0.108109
Target:  5'- gGGC-GGCCAucgUCGUCGGUGCGGCcacggacGGCg -3'
miRNA:   3'- gCCGcCCGGU---GGCGGCCAUGCCG-------CCG- -5'
23436 3' -65.8 NC_005259.1 + 13419 0.73 0.105637
Target:  5'- uGGCcgGGGUCGCCGCCGGggccGCGcuaGGCg -3'
miRNA:   3'- gCCG--CCCGGUGGCGGCCa---UGCcg-CCG- -5'
23436 3' -65.8 NC_005259.1 + 34341 0.71 0.150761
Target:  5'- gCGuuGGGguucgacgugacCCACCGCCGGUAuCGGCGcGUa -3'
miRNA:   3'- -GCcgCCC------------GGUGGCGGCCAU-GCCGC-CG- -5'
23436 3' -65.8 NC_005259.1 + 49633 0.74 0.085888
Target:  5'- uCGGCGGcaGCCGC-GUCGGcgAUGGCGGCc -3'
miRNA:   3'- -GCCGCC--CGGUGgCGGCCa-UGCCGCCG- -5'
23436 3' -65.8 NC_005259.1 + 37045 0.74 0.083682
Target:  5'- uGGUGcccGCCACCGCCc--ACGGCGGCg -3'
miRNA:   3'- gCCGCc--CGGUGGCGGccaUGCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.