miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23438 3' -54.1 NC_005259.1 + 13455 0.66 0.858553
Target:  5'- ---cCGUCGGCgCGGCGCuGGUGc-- -3'
miRNA:   3'- agauGUAGCCGaGCUGCGuCCACacc -5'
23438 3' -54.1 NC_005259.1 + 59136 0.67 0.796355
Target:  5'- --aGCGUCGaGCUCGGCaGC-GGUGccgGGg -3'
miRNA:   3'- agaUGUAGC-CGAGCUG-CGuCCACa--CC- -5'
23438 3' -54.1 NC_005259.1 + 65095 0.67 0.786727
Target:  5'- --aGC-UCGGCUCGugGCAcGGUcaGUGc -3'
miRNA:   3'- agaUGuAGCCGAGCugCGU-CCA--CACc -5'
23438 3' -54.1 NC_005259.1 + 45996 0.67 0.786727
Target:  5'- -gUACAUcugCGGgUCGACGCGaacGGUGaUGGu -3'
miRNA:   3'- agAUGUA---GCCgAGCUGCGU---CCAC-ACC- -5'
23438 3' -54.1 NC_005259.1 + 19956 0.68 0.73646
Target:  5'- gUCcGCAacggCGGCUCGGC---GGUGUGGg -3'
miRNA:   3'- -AGaUGUa---GCCGAGCUGcguCCACACC- -5'
23438 3' -54.1 NC_005259.1 + 62991 0.68 0.725013
Target:  5'- --cGCGUCGaCUCGAUggcauugGCAGGcUGUGGg -3'
miRNA:   3'- agaUGUAGCcGAGCUG-------CGUCC-ACACC- -5'
23438 3' -54.1 NC_005259.1 + 3342 0.69 0.68365
Target:  5'- cUCUGCGugcUCGGCacgacUCGACGUuaAGGUGUu- -3'
miRNA:   3'- -AGAUGU---AGCCG-----AGCUGCG--UCCACAcc -5'
23438 3' -54.1 NC_005259.1 + 52635 0.69 0.672902
Target:  5'- gCUGCGUCGGCUgUGGgGCgAGGUGa-- -3'
miRNA:   3'- aGAUGUAGCCGA-GCUgCG-UCCACacc -5'
23438 3' -54.1 NC_005259.1 + 11084 0.69 0.672902
Target:  5'- ---cCGUaCGGCUCGAccuCGCAGGUGUu- -3'
miRNA:   3'- agauGUA-GCCGAGCU---GCGUCCACAcc -5'
23438 3' -54.1 NC_005259.1 + 11406 0.7 0.640475
Target:  5'- --aGCGguuUCGGCUCGugGCcGGUGcaacgGGg -3'
miRNA:   3'- agaUGU---AGCCGAGCugCGuCCACa----CC- -5'
23438 3' -54.1 NC_005259.1 + 60758 0.71 0.564974
Target:  5'- -gUGCAgUCGGCUCGGCG-AGGU-UGGg -3'
miRNA:   3'- agAUGU-AGCCGAGCUGCgUCCAcACC- -5'
23438 3' -54.1 NC_005259.1 + 17355 0.73 0.433072
Target:  5'- gUCgagguCggCGGCUCGGCGCuGGUcGUGGu -3'
miRNA:   3'- -AGau---GuaGCCGAGCUGCGuCCA-CACC- -5'
23438 3' -54.1 NC_005259.1 + 57017 0.74 0.423655
Target:  5'- cUCaGCG-CGGCUCGGCGC-GGUG-GGg -3'
miRNA:   3'- -AGaUGUaGCCGAGCUGCGuCCACaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.