miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23439 3' -55.7 NC_005259.1 + 30761 0.66 0.775384
Target:  5'- uGCAU--GCCGACgccGGUGGCACCGc -3'
miRNA:   3'- gUGUAugUGGUUGgcaCCGCCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 59072 0.66 0.775384
Target:  5'- gGCucuCACCGGCCuuGUGGCgGGCAgUGa -3'
miRNA:   3'- gUGuauGUGGUUGG--CACCG-CCGUgGC- -5'
23439 3' -55.7 NC_005259.1 + 49437 0.66 0.765468
Target:  5'- gGCGaGCGCC-GCCuUGGuCGGCAgCCGg -3'
miRNA:   3'- gUGUaUGUGGuUGGcACC-GCCGU-GGC- -5'
23439 3' -55.7 NC_005259.1 + 13207 0.66 0.75542
Target:  5'- gCACAgcgGgGCCAGCgGUGGgccucgacCGGcCACCGu -3'
miRNA:   3'- -GUGUa--UgUGGUUGgCACC--------GCC-GUGGC- -5'
23439 3' -55.7 NC_005259.1 + 58712 0.66 0.75542
Target:  5'- cCGCcguCACCAucGCCGggGGUgucguuGGCACCGg -3'
miRNA:   3'- -GUGuauGUGGU--UGGCa-CCG------CCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 67135 0.66 0.75542
Target:  5'- uGCGUgaGCACCGcugugaGCCGcuugucgauggUGGCGGCcauGCCGc -3'
miRNA:   3'- gUGUA--UGUGGU------UGGC-----------ACCGCCG---UGGC- -5'
23439 3' -55.7 NC_005259.1 + 7405 0.66 0.75542
Target:  5'- cCGCAacgGCAuCCucgucGCCGUcGGCGGUGCCc -3'
miRNA:   3'- -GUGUa--UGU-GGu----UGGCA-CCGCCGUGGc -5'
23439 3' -55.7 NC_005259.1 + 12971 0.66 0.745251
Target:  5'- cCGCGUcggaaGCGCCcACCGUGGUGcucgcguucGCACuCGg -3'
miRNA:   3'- -GUGUA-----UGUGGuUGGCACCGC---------CGUG-GC- -5'
23439 3' -55.7 NC_005259.1 + 19550 0.66 0.745251
Target:  5'- aCGCGUAUGCCcgcAGCCGUcgGGaCaGCGCCGc -3'
miRNA:   3'- -GUGUAUGUGG---UUGGCA--CC-GcCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 9975 0.66 0.745251
Target:  5'- cCACc-GCACCggUCGaGGUGGCcaGCCGg -3'
miRNA:   3'- -GUGuaUGUGGuuGGCaCCGCCG--UGGC- -5'
23439 3' -55.7 NC_005259.1 + 20634 0.66 0.745251
Target:  5'- uGCGUucguuCG-CGACaCGUucGGCGGCACCGg -3'
miRNA:   3'- gUGUAu----GUgGUUG-GCA--CCGCCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 55309 0.66 0.741152
Target:  5'- cCGCGUGCGaCGACCacagggguggucuUGGCGGCAgCGg -3'
miRNA:   3'- -GUGUAUGUgGUUGGc------------ACCGCCGUgGC- -5'
23439 3' -55.7 NC_005259.1 + 9676 0.66 0.724593
Target:  5'- cCACAUGCGCU-GCCGgucgaGGUcgccgcucacugGGCACCGu -3'
miRNA:   3'- -GUGUAUGUGGuUGGCa----CCG------------CCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 25627 0.67 0.714125
Target:  5'- gCGCuc-UACCAGCaGUGGCGGCAgUCGc -3'
miRNA:   3'- -GUGuauGUGGUUGgCACCGCCGU-GGC- -5'
23439 3' -55.7 NC_005259.1 + 44922 0.67 0.714125
Target:  5'- cCGCAUacGCGCUGAUCG-GGUccauGGCACCa -3'
miRNA:   3'- -GUGUA--UGUGGUUGGCaCCG----CCGUGGc -5'
23439 3' -55.7 NC_005259.1 + 58780 0.67 0.70358
Target:  5'- gCGCuGUGCGCCggUCGaGGCGGUgauuGCCu -3'
miRNA:   3'- -GUG-UAUGUGGuuGGCaCCGCCG----UGGc -5'
23439 3' -55.7 NC_005259.1 + 47923 0.67 0.70358
Target:  5'- gGCGU-CGCCGaggcccuggaaGCCGaugacGGCGGUGCCGa -3'
miRNA:   3'- gUGUAuGUGGU-----------UGGCa----CCGCCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 3114 0.67 0.70358
Target:  5'- gGCcauUGCGCgGcACCGUGGgcagcggaCGGCACCGc -3'
miRNA:   3'- gUGu--AUGUGgU-UGGCACC--------GCCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 20331 0.67 0.671584
Target:  5'- uCACGUGCA-CGACCuauggcgGGCGGUACUa -3'
miRNA:   3'- -GUGUAUGUgGUUGGca-----CCGCCGUGGc -5'
23439 3' -55.7 NC_005259.1 + 47154 0.67 0.67051
Target:  5'- aACGUGCGCagcagaucACCGUagcggcgaaggucGGCGGUGCCGu -3'
miRNA:   3'- gUGUAUGUGgu------UGGCA-------------CCGCCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.