miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23439 3' -55.7 NC_005259.1 + 766 0.71 0.432685
Target:  5'- cCGCGUcCACCGcGCCGaGGCGGCugCc -3'
miRNA:   3'- -GUGUAuGUGGU-UGGCaCCGCCGugGc -5'
23439 3' -55.7 NC_005259.1 + 2025 0.72 0.387043
Target:  5'- gCACcgGCACCucaGugCGgugGGCGGuCACCGg -3'
miRNA:   3'- -GUGuaUGUGG---UugGCa--CCGCC-GUGGC- -5'
23439 3' -55.7 NC_005259.1 + 3114 0.67 0.70358
Target:  5'- gGCcauUGCGCgGcACCGUGGgcagcggaCGGCACCGc -3'
miRNA:   3'- gUGu--AUGUGgU-UGGCACC--------GCCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 4249 0.68 0.660833
Target:  5'- cCACGUGCcUCGACUGcgaggacaacgGGCGGCugCGc -3'
miRNA:   3'- -GUGUAUGuGGUUGGCa----------CCGCCGugGC- -5'
23439 3' -55.7 NC_005259.1 + 7405 0.66 0.75542
Target:  5'- cCGCAacgGCAuCCucgucGCCGUcGGCGGUGCCc -3'
miRNA:   3'- -GUGUa--UGU-GGu----UGGCA-CCGCCGUGGc -5'
23439 3' -55.7 NC_005259.1 + 7854 0.69 0.564047
Target:  5'- gACGgaccGCGCCGACCccGGUGGC-CCGa -3'
miRNA:   3'- gUGUa---UGUGGUUGGcaCCGCCGuGGC- -5'
23439 3' -55.7 NC_005259.1 + 8945 0.7 0.501498
Target:  5'- uCACGguggGCGC--GCCGUGGacgGGCACCGu -3'
miRNA:   3'- -GUGUa---UGUGguUGGCACCg--CCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 9676 0.66 0.724593
Target:  5'- cCACAUGCGCU-GCCGgucgaGGUcgccgcucacugGGCACCGu -3'
miRNA:   3'- -GUGUAUGUGGuUGGCa----CCG------------CCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 9817 0.69 0.564047
Target:  5'- cCGCccGCACC-GCCGgGuGCGGCGCUGg -3'
miRNA:   3'- -GUGuaUGUGGuUGGCaC-CGCCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 9975 0.66 0.745251
Target:  5'- cCACc-GCACCggUCGaGGUGGCcaGCCGg -3'
miRNA:   3'- -GUGuaUGUGGuuGGCaCCGCCG--UGGC- -5'
23439 3' -55.7 NC_005259.1 + 11642 0.72 0.395916
Target:  5'- cCAUGUAUAUCAagauauACCGUGGCGGCcacaucgagccACCGc -3'
miRNA:   3'- -GUGUAUGUGGU------UGGCACCGCCG-----------UGGC- -5'
23439 3' -55.7 NC_005259.1 + 12971 0.66 0.745251
Target:  5'- cCGCGUcggaaGCGCCcACCGUGGUGcucgcguucGCACuCGg -3'
miRNA:   3'- -GUGUA-----UGUGGuUGGCACCGC---------CGUG-GC- -5'
23439 3' -55.7 NC_005259.1 + 13207 0.66 0.75542
Target:  5'- gCACAgcgGgGCCAGCgGUGGgccucgacCGGcCACCGu -3'
miRNA:   3'- -GUGUa--UgUGGUUGgCACC--------GCC-GUGGC- -5'
23439 3' -55.7 NC_005259.1 + 15196 0.69 0.564047
Target:  5'- -uCGUGCACCGcaugauGCUGUGGCgcucGGCGCuCGg -3'
miRNA:   3'- guGUAUGUGGU------UGGCACCG----CCGUG-GC- -5'
23439 3' -55.7 NC_005259.1 + 19550 0.66 0.745251
Target:  5'- aCGCGUAUGCCcgcAGCCGUcgGGaCaGCGCCGc -3'
miRNA:   3'- -GUGUAUGUGG---UUGGCA--CC-GcCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 20084 0.68 0.628466
Target:  5'- cCACGUcgaaacCACCGAcCCGUGGUGaGcCGCCGu -3'
miRNA:   3'- -GUGUAu-----GUGGUU-GGCACCGC-C-GUGGC- -5'
23439 3' -55.7 NC_005259.1 + 20331 0.67 0.671584
Target:  5'- uCACGUGCA-CGACCuauggcgGGCGGUACUa -3'
miRNA:   3'- -GUGUAUGUgGUUGGca-----CCGCCGUGGc -5'
23439 3' -55.7 NC_005259.1 + 20634 0.66 0.745251
Target:  5'- uGCGUucguuCG-CGACaCGUucGGCGGCACCGg -3'
miRNA:   3'- gUGUAu----GUgGUUG-GCA--CCGCCGUGGC- -5'
23439 3' -55.7 NC_005259.1 + 25627 0.67 0.714125
Target:  5'- gCGCuc-UACCAGCaGUGGCGGCAgUCGc -3'
miRNA:   3'- -GUGuauGUGGUUGgCACCGCCGU-GGC- -5'
23439 3' -55.7 NC_005259.1 + 25962 0.7 0.51173
Target:  5'- cCGCcgACGCCugcgaugaGACCG-GGCaGCGCCGa -3'
miRNA:   3'- -GUGuaUGUGG--------UUGGCaCCGcCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.