miRNA: 3'- gaCUUC-GCAGUCGuCCCG-UCG-UACUc -5'
miRNA: 3'- -GACUUCGCag-UCG-------------UCCCGuCGUACUc -5'
miRNA: 3'- -GACUuCGca----GUCGUCCCGu-CGuaCUC- -5'
miRNA: 3'- gACUUCGCaGUCGUCc-CGUCGUACUc -5'
miRNA: 3'- -GACUUCGCAGUCGUCCCGUCGUACUC- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2344 | 3' | -55.2 | NC_001416.1 | + | 17890 | 0.66 | 0.637244 |
|
Target: 5'- -gGAGGcCGUCGGUcGGGCgAGCgAUGAu -3' miRNA: 3'- gaCUUC-GCAGUCGuCCCG-UCG-UACUc -5' |
|||||||
| 2344 | 3' | -55.2 | NC_001416.1 | + | 41004 | 0.67 | 0.602264 |
|
Target: 5'- uCUGGAGUGgaaAGCgagauggggagacAGGGCuGCAUGAu -3' miRNA: 3'- -GACUUCGCag-UCG-------------UCCCGuCGUACUc -5' |
|||||||
| 2344 | 3' | -55.2 | NC_001416.1 | + | 10380 | 0.68 | 0.514903 |
|
Target: 5'- gCUGAuGCagaaagCGGCAGGGCuuGCcgGAGg -3' miRNA: 3'- -GACUuCGca----GUCGUCCCGu-CGuaCUC- -5' |
|||||||
| 2344 | 3' | -55.2 | NC_001416.1 | + | 7813 | 0.69 | 0.432133 |
|
Target: 5'- aUGAGGUG-CGGCAGcuGCGGCGUGGa -3' miRNA: 3'- gACUUCGCaGUCGUCc-CGUCGUACUc -5' |
|||||||
| 2344 | 3' | -55.2 | NC_001416.1 | + | 12015 | 1.08 | 0.000818 |
|
Target: 5'- cCUGAAGCGUCAGCAGGGCAGCAUGAGc -3' miRNA: 3'- -GACUUCGCAGUCGUCCCGUCGUACUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home