miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23440 3' -54.2 NC_005259.1 + 5015 0.66 0.82911
Target:  5'- uGGUCGAgAUCGauccGGCcCCACACGaCAGc -3'
miRNA:   3'- gUCAGCUgUAGC----CUGuGGUGUGC-GUU- -5'
23440 3' -54.2 NC_005259.1 + 5650 0.72 0.482379
Target:  5'- -cGagGACggCGGGCGCUACACGCGc -3'
miRNA:   3'- guCagCUGuaGCCUGUGGUGUGCGUu -5'
23440 3' -54.2 NC_005259.1 + 6253 0.67 0.740715
Target:  5'- gGGUCGAUAUCccGCACCGC-CGCc- -3'
miRNA:   3'- gUCAGCUGUAGccUGUGGUGuGCGuu -5'
23440 3' -54.2 NC_005259.1 + 7420 0.66 0.81065
Target:  5'- -cGUCGcCGUCGGcggugcccGCGCCGCAUgGCAGc -3'
miRNA:   3'- guCAGCuGUAGCC--------UGUGGUGUG-CGUU- -5'
23440 3' -54.2 NC_005259.1 + 8655 0.68 0.719577
Target:  5'- aGGcUGugGUCGGGCugC-CACGCGGg -3'
miRNA:   3'- gUCaGCugUAGCCUGugGuGUGCGUU- -5'
23440 3' -54.2 NC_005259.1 + 10716 0.7 0.599493
Target:  5'- gUAGUUGGCccgcaugauGUCGGugauCACCGCGCGCu- -3'
miRNA:   3'- -GUCAGCUG---------UAGCCu---GUGGUGUGCGuu -5'
23440 3' -54.2 NC_005259.1 + 11231 0.76 0.296304
Target:  5'- gCAGUCcucgGGC-UCGGGCAUCGCGCGCAc -3'
miRNA:   3'- -GUCAG----CUGuAGCCUGUGGUGUGCGUu -5'
23440 3' -54.2 NC_005259.1 + 11297 0.68 0.697012
Target:  5'- aCGGUCGACGggCGuGAgGCCgagacggGCGCGCAGc -3'
miRNA:   3'- -GUCAGCUGUa-GC-CUgUGG-------UGUGCGUU- -5'
23440 3' -54.2 NC_005259.1 + 16455 0.74 0.377435
Target:  5'- -cGUCGGCAUCGGuACcCCGC-CGCAGa -3'
miRNA:   3'- guCAGCUGUAGCC-UGuGGUGuGCGUU- -5'
23440 3' -54.2 NC_005259.1 + 18179 0.69 0.643457
Target:  5'- gCAGUCGAgGUCGaccccGACAUCGCACcCAAg -3'
miRNA:   3'- -GUCAGCUgUAGC-----CUGUGGUGUGcGUU- -5'
23440 3' -54.2 NC_005259.1 + 21177 0.66 0.791443
Target:  5'- gCAGUCGGguCAUCGGcgcgaGCACCAaGCuGCAAg -3'
miRNA:   3'- -GUCAGCU--GUAGCC-----UGUGGUgUG-CGUU- -5'
23440 3' -54.2 NC_005259.1 + 24553 0.71 0.545218
Target:  5'- cCAGaUCGGCGggguguacucgUGGGCACCGCACGUg- -3'
miRNA:   3'- -GUC-AGCUGUa----------GCCUGUGGUGUGCGuu -5'
23440 3' -54.2 NC_005259.1 + 33858 0.71 0.543076
Target:  5'- uGGUCGACucaagcaucugcUCGGugAgCACACGCGGg -3'
miRNA:   3'- gUCAGCUGu-----------AGCCugUgGUGUGCGUU- -5'
23440 3' -54.2 NC_005259.1 + 36030 0.68 0.708873
Target:  5'- aGGUCGACAUgaucagcgaGGcCACC-CGCGCGAg -3'
miRNA:   3'- gUCAGCUGUAg--------CCuGUGGuGUGCGUU- -5'
23440 3' -54.2 NC_005259.1 + 40486 0.69 0.654447
Target:  5'- gCGGUUGACGUUGGACACCccgaACAU-CGAg -3'
miRNA:   3'- -GUCAGCUGUAGCCUGUGG----UGUGcGUU- -5'
23440 3' -54.2 NC_005259.1 + 42601 0.73 0.436662
Target:  5'- gCAGUCGACAUCGG-CGgucaugagcccgaugUCGCGCGUAGg -3'
miRNA:   3'- -GUCAGCUGUAGCCuGU---------------GGUGUGCGUU- -5'
23440 3' -54.2 NC_005259.1 + 45903 0.72 0.442485
Target:  5'- uCGGUCGg---CGGGCACCGCugGUAGa -3'
miRNA:   3'- -GUCAGCuguaGCCUGUGGUGugCGUU- -5'
23440 3' -54.2 NC_005259.1 + 46331 0.66 0.791443
Target:  5'- gGGUCG-CGUCGcGCACCGCuuGUAGg -3'
miRNA:   3'- gUCAGCuGUAGCcUGUGGUGugCGUU- -5'
23440 3' -54.2 NC_005259.1 + 49296 0.72 0.442485
Target:  5'- gUAGUCGACAucgUCGGGgucCAUCAgGCGCGAg -3'
miRNA:   3'- -GUCAGCUGU---AGCCU---GUGGUgUGCGUU- -5'
23440 3' -54.2 NC_005259.1 + 50111 0.67 0.770562
Target:  5'- aGGUUGcccguacGCA-CGGGCaccGCCACACGCGAu -3'
miRNA:   3'- gUCAGC-------UGUaGCCUG---UGGUGUGCGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.