Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23440 | 3' | -54.2 | NC_005259.1 | + | 51362 | 0.68 | 0.708873 |
Target: 5'- cCGGU-GGCAcCGGcACACCGCGCGUg- -3' miRNA: 3'- -GUCAgCUGUaGCC-UGUGGUGUGCGuu -5' |
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23440 | 3' | -54.2 | NC_005259.1 | + | 51658 | 0.69 | 0.643457 |
Target: 5'- gGGUUGccgcgcgggcGCGUCGGGCACgGgCGCGCGAu -3' miRNA: 3'- gUCAGC----------UGUAGCCUGUGgU-GUGCGUU- -5' |
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23440 | 3' | -54.2 | NC_005259.1 | + | 54356 | 0.68 | 0.708873 |
Target: 5'- gGGUCgGGCAaCGGAUugCGCuCGCGAu -3' miRNA: 3'- gUCAG-CUGUaGCCUGugGUGuGCGUU- -5' |
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23440 | 3' | -54.2 | NC_005259.1 | + | 56637 | 0.67 | 0.740715 |
Target: 5'- aUAGUUGuucucgaaaGCAUCgaGGGCACCGCGCGUc- -3' miRNA: 3'- -GUCAGC---------UGUAG--CCUGUGGUGUGCGuu -5' |
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23440 | 3' | -54.2 | NC_005259.1 | + | 56804 | 0.72 | 0.462205 |
Target: 5'- aCAGaUCGGgGUCGGugGCCACccauuGCGCGc -3' miRNA: 3'- -GUC-AGCUgUAGCCugUGGUG-----UGCGUu -5' |
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23440 | 3' | -54.2 | NC_005259.1 | + | 63671 | 0.66 | 0.819979 |
Target: 5'- ----gGACAccUCGGGCACCgGCGCGCc- -3' miRNA: 3'- gucagCUGU--AGCCUGUGG-UGUGCGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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