miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23440 5' -55.8 NC_005259.1 + 19194 0.66 0.782115
Target:  5'- cCUCGACag-CgagCUCGUggugCGGGCGGCGa -3'
miRNA:   3'- -GGGCUGcuaGaa-GAGCA----GCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 44657 0.66 0.782115
Target:  5'- gCCCGAcuCGAaCgccacacCGUUGGGCAGCGu -3'
miRNA:   3'- -GGGCU--GCUaGaaga---GCAGCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 67582 0.66 0.772407
Target:  5'- -aUGAUGAUCgacgCGUCGGGC-GCGa -3'
miRNA:   3'- ggGCUGCUAGaagaGCAGCCCGuCGU- -5'
23440 5' -55.8 NC_005259.1 + 64611 0.66 0.772407
Target:  5'- aCUGACGG-CgagCgCGaCGGGCAGCAg -3'
miRNA:   3'- gGGCUGCUaGaa-GaGCaGCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 7791 0.66 0.772407
Target:  5'- cCCCGGCGGggUUUUCUCGUuuguaaugacCGguaaugacccGGCGGCGg -3'
miRNA:   3'- -GGGCUGCU--AGAAGAGCA----------GC----------CCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 30083 0.66 0.772407
Target:  5'- aCCCGAUG-UCgaccgccCUCGUCGGaGCuguguGCAu -3'
miRNA:   3'- -GGGCUGCuAGaa-----GAGCAGCC-CGu----CGU- -5'
23440 5' -55.8 NC_005259.1 + 50687 0.66 0.771428
Target:  5'- gCCGACGAggcgCUgCUCGUCGucgcgcuugagccGGguGCu -3'
miRNA:   3'- gGGCUGCUa---GAaGAGCAGC-------------CCguCGu -5'
23440 5' -55.8 NC_005259.1 + 60283 0.66 0.752591
Target:  5'- gCCgGGCGGcCaUCgUCGUCGGuGCGGCc -3'
miRNA:   3'- -GGgCUGCUaGaAG-AGCAGCC-CGUCGu -5'
23440 5' -55.8 NC_005259.1 + 3305 0.66 0.752591
Target:  5'- cCUCGGCGAgcgCUgcgUCgacgugagCGcCGGGCAGCu -3'
miRNA:   3'- -GGGCUGCUa--GA---AGa-------GCaGCCCGUCGu -5'
23440 5' -55.8 NC_005259.1 + 39466 0.66 0.752591
Target:  5'- aCUGGCGAgccg-UCGUCGcGGUAGCAc -3'
miRNA:   3'- gGGCUGCUagaagAGCAGC-CCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 49716 0.67 0.732315
Target:  5'- aUCCGGCaGAUa--UUCGgCGGGCGGCGa -3'
miRNA:   3'- -GGGCUG-CUAgaaGAGCaGCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 62538 0.67 0.709576
Target:  5'- cCUCGACGGUCcgagagauagcCUCacCGGGCAGCGg -3'
miRNA:   3'- -GGGCUGCUAGaa---------GAGcaGCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 52744 0.67 0.707491
Target:  5'- gCCGGgauCGAUCUgcacaacaucgagCUCGUCGgugucGGCAGCGu -3'
miRNA:   3'- gGGCU---GCUAGAa------------GAGCAGC-----CCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 37583 0.67 0.701216
Target:  5'- gCCCGcgcCGAUCUgcaagCUgaaCGUCGGGCcgAGCu -3'
miRNA:   3'- -GGGCu--GCUAGAa----GA---GCAGCCCG--UCGu -5'
23440 5' -55.8 NC_005259.1 + 68691 0.67 0.701216
Target:  5'- uCUCGAUGAUCga---GgCGGGCAGCGc -3'
miRNA:   3'- -GGGCUGCUAGaagagCaGCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 7479 0.68 0.679092
Target:  5'- uCCCGACauaggcgGGUaaguuagUUCUUGUCGGGCGGgAg -3'
miRNA:   3'- -GGGCUG-------CUAg------AAGAGCAGCCCGUCgU- -5'
23440 5' -55.8 NC_005259.1 + 62708 0.68 0.669548
Target:  5'- aUCCGGCGAUCaggcgggggaUCUCGcUCGaccggaccGGCGGCAg -3'
miRNA:   3'- -GGGCUGCUAGa---------AGAGC-AGC--------CCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 41516 0.68 0.665298
Target:  5'- aCCGugGAUCUgcacggggaaaagCUCGUCGucGCAGUc -3'
miRNA:   3'- gGGCugCUAGAa------------GAGCAGCc-CGUCGu -5'
23440 5' -55.8 NC_005259.1 + 18705 0.68 0.637581
Target:  5'- -aCGGCGGUCUgacCUCGaucaUCGGGCcgcccGGCAu -3'
miRNA:   3'- ggGCUGCUAGAa--GAGC----AGCCCG-----UCGU- -5'
23440 5' -55.8 NC_005259.1 + 49584 0.68 0.635446
Target:  5'- aCCGGCGggCggggucagcacCUCGaccUCGGGCAGCu -3'
miRNA:   3'- gGGCUGCuaGaa---------GAGC---AGCCCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.