miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23440 5' -55.8 NC_005259.1 + 60200 0.68 0.626903
Target:  5'- aCCGggccACGAUCUcgccgaUCUCGUCGGcGCugAGCu -3'
miRNA:   3'- gGGC----UGCUAGA------AGAGCAGCC-CG--UCGu -5'
23440 5' -55.8 NC_005259.1 + 14223 0.69 0.60557
Target:  5'- aCCCGGCGcgCgUCgugCGuaUCGGGCcgGGCAa -3'
miRNA:   3'- -GGGCUGCuaGaAGa--GC--AGCCCG--UCGU- -5'
23440 5' -55.8 NC_005259.1 + 8806 0.69 0.60557
Target:  5'- -gCGAgGAUCUUCUCGcgcCGGGcCGGUg -3'
miRNA:   3'- ggGCUgCUAGAAGAGCa--GCCC-GUCGu -5'
23440 5' -55.8 NC_005259.1 + 3172 0.7 0.542336
Target:  5'- gCCCGGCGAUg-UCaaggUCGUCGGuGCGcGCAc -3'
miRNA:   3'- -GGGCUGCUAgaAG----AGCAGCC-CGU-CGU- -5'
23440 5' -55.8 NC_005259.1 + 10163 0.7 0.542336
Target:  5'- aCUGACGAUCUcgggaaaCUCugaGGGCAGCAc -3'
miRNA:   3'- gGGCUGCUAGAa------GAGcagCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 916 0.71 0.498379
Target:  5'- gCCCGGCGAUCaccugcugCUgCGcgacagcggaaaagUCGGGCAGCu -3'
miRNA:   3'- -GGGCUGCUAGaa------GA-GC--------------AGCCCGUCGu -5'
23440 5' -55.8 NC_005259.1 + 55015 0.71 0.481437
Target:  5'- gCuuGGCGGUCgUCUCGgcaCGGGCuGCc -3'
miRNA:   3'- -GggCUGCUAGaAGAGCa--GCCCGuCGu -5'
23440 5' -55.8 NC_005259.1 + 47609 0.71 0.481437
Target:  5'- gUCGGCGAggcugagguUCUUgUCGUCgccgaGGGCAGCGa -3'
miRNA:   3'- gGGCUGCU---------AGAAgAGCAG-----CCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 60052 0.72 0.433333
Target:  5'- uUCGG-GGUCUUCUCGggcucaggcUCGGGCGGCu -3'
miRNA:   3'- gGGCUgCUAGAAGAGC---------AGCCCGUCGu -5'
23440 5' -55.8 NC_005259.1 + 63933 0.73 0.396931
Target:  5'- aCUCGugGGUCUUaC-CGUCcGGCAGCGa -3'
miRNA:   3'- -GGGCugCUAGAA-GaGCAGcCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 10754 0.73 0.370953
Target:  5'- gCCgGGCGAUCaUCaUGUCGGGCGGg- -3'
miRNA:   3'- -GGgCUGCUAGaAGaGCAGCCCGUCgu -5'
23440 5' -55.8 NC_005259.1 + 41851 0.75 0.279069
Target:  5'- cCUCGACGGUgUcccaCUCGaCGGGCAGCAc -3'
miRNA:   3'- -GGGCUGCUAgAa---GAGCaGCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 37520 0.75 0.272289
Target:  5'- gCCCGACGAgaagaUCGUCGGGCcGCc -3'
miRNA:   3'- -GGGCUGCUagaagAGCAGCCCGuCGu -5'
23440 5' -55.8 NC_005259.1 + 32561 0.76 0.252742
Target:  5'- cCCCGGCGAgcgCggggauagCGUUGGGCAGCGg -3'
miRNA:   3'- -GGGCUGCUa--Gaaga----GCAGCCCGUCGU- -5'
23440 5' -55.8 NC_005259.1 + 58917 0.77 0.228492
Target:  5'- gUCGGCGGUCUUgUCGUCGgcgggcgcgguGGCAGCGu -3'
miRNA:   3'- gGGCUGCUAGAAgAGCAGC-----------CCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.